Non-Coding RNA Search

Ss1.1-Mixg-0007g03.3

Sequence:


               
               GGAATGGCCTAGTGAAGGTATTTCGAAATGAGAGAAGAGAAGGTTTAATTCAGGCACGAA
GTATCGGTGCCCAGAAGGCCAAACTGGGACAGGTTTTGATATACCTCGACGCCCACTGCG
AGGTGGCAGTTAACTGGTATGCACCACTTGTAGCTCCTATATCTAAGGACAGAACTACAT
GTACTGTGCCTCTAATAGATTACATAGATGGGAATGATTTTTCCATTGAGCCACAGCAAG
GTGGGGACGAAGATGGCTTTGCCAGAGGGGCCTGGGACTGGAGTTTACTGTGGAAACGTA
TTCCCCTAAGCCACAAGGAAAAGGCCAAGAGAAAACATAAAACTGAGCCTTATCGGTAAA
GATTACTGCTTCCTCTTCTTATGTGAAATGTTGATCTAAGTGCCTTCTTTTTTTTCCTTC
CCCATGTATTCATATAAACATGTGGGTCCGTACGTGTCCTTCCATTTCATCTTTGCTGCC
ATCATCAACACAACACAGAACCATTTGCACTGTGCCGATTATAGATGTCATAAATGGCAA
CACGTATGAAATTGTACCCCAAGGGGGTGGTGATGAAGATGGGTATGCCCGAGGCGCGTG
GGATTGGAGCATGCTCTGGAAACGGGTGCCTCTGACCCCTCGAGAGAAGAGAATGAGAAA
GACAAAAACTGAACCGTATCGGTAATCACTAAATCACTTACCTGTTTTTCTTTTCTCCAG
CTGGCACTAACCTATTAACCTCTTGCCAACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAG
TATTATTATTGAAACTGTACCTGCTGTCTCAGATTCTGAAAGGTTTTCTTTCTTGGCTCT
ATTTCACACGTTTAAATTCACAGTGATTGCTTTTTCCTTAAAAGCAAGCTCCATTTGGGG
GTGGGCATATATTTCATGGCATTAGTTCCAAATACCAGTGGAAAAAACAAAGTCTTTTGT
CATCCCGTCCTAATAGACTGGACATGAGATTATGTTCTTTTGACGATCACGTCATTCTGT
AAGTTTAAAACGTGTAAATTACTTACAGTGCAAGTTTTATATCCACTTCGATGCCTTGGG
GGTAGTGTTAACAATGAAAGGCTGCGGCAAGAGTTTTTTCCCTCCTTTTGTTTTATCTGC
TAACTCTTAAATACTATTTTTGTACAAGTTAAAGTTGATGAATAAAAATACATGACTTTG
GGAAATGTTACATAGAATCCTTTATTACATTCTCAGAAGAGTATTTGATTAAAAGGAAAC
TTTATTCCAAAATCAGCCTTTCTCCCTTCTGTGGCTCTTCAGATAGAACAATTTATGCTA
CTCTCTGCTTTTGGTCTTTTCACTGGAACGTTTTACCATCTTTCAGAAGAGTGGCCCCAA
ATGAAATGTTTGCTTAAATGCTCCTGTAAGCTTCCCACTGTGTCTGATTTTACTTCTCTG
ACCTTACAGTTTTGCTTTTGGTCTCTCTCCCTGTAATGCTACTGATGATGTTCGACTCAA
TTTTGGAAAGGTATCTCCATGCAGAAAGCTGATGGGATTTGGGCACATTGATTGAGATAC
CAGGATACAGAAATGGCAAACATAAGGAAATTTTACAACTTTTAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGGCCTAGTGAAGGTATTTCGAAATGAGAGAAGAGAAGGTTTAATTCAGGCACGAA
GTATCGGTGCCCAGAAGGCCAAACTGGGACAGGTTTTGATATACCTCGACGCCCACTGCG
AGGTGGCAGTTAACTGGTATGCACCACTTGTAGCTCCTATATCTAAGGACAGAACTACAT
GTACTGTGCCTCTAATAGATTACATAGATGGGAATGATTTTTCCATTGAGCCACAGCAAG
GTGGGGACGAAGATGGCTTTGCCAGAGGGGCCTGGGACTGGAGTTTACTGTGGAAACGTA
TTCCCCTAAGCCACAAGGAAAAGGCCAAGAGAAAACATAAAACTGAGCCTTATCGGTAAA
GATTACTGCTTCCTCTTCTTATGTGAAATGTTGATCTAAGTGCCTTCTTTTTTTTCCTTC
CCCATGTATTCATATAAACATGTGGGTCCGTACGTGTCCTTCCATTTCATCTTTGCTGCC
ATCATCAACACAACACAGAACCATTTGCACTGTGCCGATTATAGATGTCATAAATGGCAA
CACGTATGAAATTGTACCCCAAGGGGGTGGTGATGAAGATGGGTATGCCCGAGGCGCGTG
GGATTGGAGCATGCTCTGGAAACGGGTGCCTCTGACCCCTCGAGAGAAGAGAATGAGAAA
GACAAAAACTGAACCGTATCGGTAATCACTAAATCACTTACCTGTTTTTCTTTTCTCCAG
CTGGCACTAACCTATTAACCTCTTGCCAACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAG
TATTATTATTGAAACTGTACCTGCTGTCTCAGATTCTGAAAGGTTTTCTTTCTTGGCTCT
ATTTCACACGTTTAAATTCACAGTGATTGCTTTTTCCTTAAAAGCAAGCTCCATTTGGGG
GTGGGCATATATTTCATGGCATTAGTTCCAAATACCAGTGGAAAAAACAAAGTCTTTTGT
CATCCCGTCCTAATAGACTGGACATGAGATTATGTTCTTTTGACGATCACGTCATTCTGT
AAGTTTAAAACGTGTAAATTACTTACAGTGCAAGTTTTATATCCACTTCGATGCCTTGGG
GGTAGTGTTAACAATGAAAGGCTGCGGCAAGAGTTTTTTCCCTCCTTTTGTTTTATCTGC
TAACTCTTAAATACTATTTTTGTACAAGTTAAAGTTGATGAATAAAAATACATGACTTTG
GGAAATGTTACATAGAATCCTTTATTACATTCTCAGAAGAGTATTTGATTAAAAGGAAAC
TTTATTCCAAAATCAGCCTTTCTCCCTTCTGTGGCTCTTCAGATAGAACAATTTATGCTA
CTCTCTGCTTTTGGTCTTTTCACTGGAACGTTTTACCATCTTTCAGAAGAGTGGCCCCAA
ATGAAATGTTTGCTTAAATGCTCCTGTAAGCTTCCCACTGTGTCTGATTTTACTTCTCTG
ACCTTACAGTTTTGCTTTTGGTCTCTCTCCCTGTAATGCTACTGATGATGTTCGACTCAA
TTTTGGAAAGGTATCTCCATGCAGAAAGCTGATGGGATTTGGGCACATTGATTGAGATAC
CAGGATACAGAAATGGCAAACATAAGGAAATTTTACAACTTTTAGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               405-640, - strand, RNAz p=0.949853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-640, - strand, RNAz p=0.949853

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               170-959, gnl|bosTau2|chr8 (3160700-3161525)
               

               
               170-959, gnl|Hg17|chr4 (174593673-174594471)
               

               
               170-959, gnl|Mm7|chr8 (55925801-55925080)
               


               
               1014-1608, gnl|bosTau2|chr8 (3161699-3162298)
               

               
               1014-1608, gnl|Hg17|chr4 (174594527-174595153)
               

               
               1014-1608, gnl|Mm7|chr8 (55924958-55924347)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-959, gnl|bosTau2|chr8 (3160700-3161525)
               

               
               170-959, gnl|Hg17|chr4 (174593673-174594471)
               

               
               170-959, gnl|Mm7|chr8 (55925801-55925080)
               


               
               1014-1608, gnl|bosTau2|chr8 (3161699-3162298)
               

               
               1014-1608, gnl|Hg17|chr4 (174594527-174595153)
               

               
               1014-1608, gnl|Mm7|chr8 (55924958-55924347)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	170-959, gnl\|bosTau2\|chr8 (3160700-3161525)
	170-959, gnl\|Hg17\|chr4 (174593673-174594471)
	170-959, gnl\|Mm7\|chr8 (55925801-55925080)

	1014-1608, gnl\|bosTau2\|chr8 (3161699-3162298)
	1014-1608, gnl\|Hg17\|chr4 (174594527-174595153)
	1014-1608, gnl\|Mm7\|chr8 (55924958-55924347)