Non-Coding RNA Search

Ss1.1-Mixg-0007h01.3

Sequence:


               
               ACTAGCCTCCTAGCTTCTGGAGTATGTTAAGTAATTTTGAAGTTGACCTATGGAAAGAGA
AATAGCTCTTGGCTTCTTCAGATGACAAAATGAAATGATTGTTGCTAATGCTGTGCCAAA
ATTATATAACATTCTCCAACACTTTTGATGTCTTAGTGATAAATTAAGACTTCGTTTTAA
AAATGAAGATGTTTGGGGAAATGGTATGCTTGAATGTCTCACGTTTTAAGTTGTAACAGT
TGAATACTTGTGGCTTACCTATTGATGTGCTTAAACTTAGTGGAAACTGATTAAACAATC
TCCCAAATGGGCCTATTATTTTAGTAATAAAGATGTACTTTCTAAATTTCTTAGGATGTG
GGTTAGTCTTACAAACAGTTTTAAATTAAGGATTCTGTACAGTCCAGTTTTCTAATTTAC
CTTTTAAATAAAGTAACCTATCCCGTTTCTAATTTGCCTTTTGCCATTGTGGAAAGAAAA
ATTTTAAACTGTTTCTTATCTGCTGTTAGTCTTCCTGGTGGGTGTTTTAAAAATCTCTTT
TGAGAAAGGTGGCATGGTGAATAAAATTGGTATTTTAGATTAAGTAGAATATGAAGTACA
CTTCATATATACTAGTTTTTCTCCCATTATTCATTTTAAGTTGCCTTAAATTCAAGTGCT
ATAACTAAAGTATTGGTTACAGTAGGTACTCATTAAAATGGTTTGTAGTTGAATGTCTAA
GCTAGCATTGCGTTAAAAAGTAATTTATTATCAGATTGATGGTACACCTTGTATTTAGCA
CATTTGTTTGCATGTTGATAAAATTTCCTAAGTCTTATTTCTTAAATCCAATTATTGATC
CTATAGTTAATGCAGCATATGAAAACTGGTTATATGTTTCAATTGGTGTTAAATGTGCCC
CCCCCAAAATCTTACAGCAGTTGTTTAATAGAACTTCCATGATATACTTAGATACTTCAA
GCCTTTTCTGTCTCTTACACAATGGTGCTCTATCCTGTTTTCTCTTTTCAAAGAAGCATC
TGAACACTTGTATTTGCATATTCTCATCCAAAGGCATTCATGTCCAAGTGGGGTTTTTAA
GTTGATTAAAATGTTTTTCACATAGAAGGGTTTCTACAATACTTGTGGCCAACTGAATCT
GAATGTCAGTAGTTTTGACTATGGGAAAGGTGCATATACTAGATTAAAGCTCTTATATAA
AAAAAGCTTTAAACCAAACTATGGATTTGTATCATGATTTAACAGTATTCTTGGATTTTT
CTTGCAGTGTTTCATTTCTTGTACAGTAGCTCTGTGAGATAATGTTGCTGTGAATTGATA
CTGTAATCAATAAAGTGCTTTTAACCAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAGCCTCCTAGCTTCTGGAGTATGTTAAGTAATTTTGAAGTTGACCTATGGAAAGAGA
AATAGCTCTTGGCTTCTTCAGATGACAAAATGAAATGATTGTTGCTAATGCTGTGCCAAA
ATTATATAACATTCTCCAACACTTTTGATGTCTTAGTGATAAATTAAGACTTCGTTTTAA
AAATGAAGATGTTTGGGGAAATGGTATGCTTGAATGTCTCACGTTTTAAGTTGTAACAGT
TGAATACTTGTGGCTTACCTATTGATGTGCTTAAACTTAGTGGAAACTGATTAAACAATC
TCCCAAATGGGCCTATTATTTTAGTAATAAAGATGTACTTTCTAAATTTCTTAGGATGTG
GGTTAGTCTTACAAACAGTTTTAAATTAAGGATTCTGTACAGTCCAGTTTTCTAATTTAC
CTTTTAAATAAAGTAACCTATCCCGTTTCTAATTTGCCTTTTGCCATTGTGGAAAGAAAA
ATTTTAAACTGTTTCTTATCTGCTGTTAGTCTTCCTGGTGGGTGTTTTAAAAATCTCTTT
TGAGAAAGGTGGCATGGTGAATAAAATTGGTATTTTAGATTAAGTAGAATATGAAGTACA
CTTCATATATACTAGTTTTTCTCCCATTATTCATTTTAAGTTGCCTTAAATTCAAGTGCT
ATAACTAAAGTATTGGTTACAGTAGGTACTCATTAAAATGGTTTGTAGTTGAATGTCTAA
GCTAGCATTGCGTTAAAAAGTAATTTATTATCAGATTGATGGTACACCTTGTATTTAGCA
CATTTGTTTGCATGTTGATAAAATTTCCTAAGTCTTATTTCTTAAATCCAATTATTGATC
CTATAGTTAATGCAGCATATGAAAACTGGTTATATGTTTCAATTGGTGTTAAATGTGCCC
CCCCCAAAATCTTACAGCAGTTGTTTAATAGAACTTCCATGATATACTTAGATACTTCAA
GCCTTTTCTGTCTCTTACACAATGGTGCTCTATCCTGTTTTCTCTTTTCAAAGAAGCATC
TGAACACTTGTATTTGCATATTCTCATCCAAAGGCATTCATGTCCAAGTGGGGTTTTTAA
GTTGATTAAAATGTTTTTCACATAGAAGGGTTTCTACAATACTTGTGGCCAACTGAATCT
GAATGTCAGTAGTTTTGACTATGGGAAAGGTGCATATACTAGATTAAAGCTCTTATATAA
AAAAAGCTTTAAACCAAACTATGGATTTGTATCATGATTTAACAGTATTCTTGGATTTTT
CTTGCAGTGTTTCATTTCTTGTACAGTAGCTCTGTGAGATAATGTTGCTGTGAATTGATA
CTGTAATCAATAAAGTGCTTTTAACCAGAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               460-1100, gnl|bosTau2|chr2 (53661333-53660653)
               

               
               460-1100, gnl|Hg17|chr3 (180597536-180596856)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               460-1100, gnl|bosTau2|chr2 (53661333-53660653)
               

               
               460-1100, gnl|Hg17|chr3 (180597536-180596856)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               mgp (0.461361)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	460-1100, gnl\|bosTau2\|chr2 (53661333-53660653)
	460-1100, gnl\|Hg17\|chr3 (180597536-180596856)

	mgp (0.461361)
	fco (0.314416)
	ret (0.257467)
	tra (0.246184)
	fcc (0.197785)
	aor (0.195274)
	sin (0.174948)
	fhi (0.169578)
	tbr (0.154178)
	bfe (0.149858)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	kid (0.129735)
	ova (0.129132)
	cty (0.10408)