Non-Coding RNA Search

Ss1.1-Mixg-0007h05.3

Sequence:


               
               ATCTGTAAGGGGTACGTAGGCCACTTAATCACTGAATAGCTTGGCCTATAGGGCTCTCCT
TGAGTACGCGCGAGTCATTGATAATCCGCCTGGTTCAGTGGCCCCTCTTTGAACTCTCAC
GCTTCGGAGACCTACCTGTTCTTCCAGACGAGAGCACGGAAGGGTACCGTGGTACCCTTC
CGTGCAATCTCTGCTCACGGCACTTTGGAATTATTTCAGTGAAGTCCTAACATTTATCAC
TGTGGATCCAACTATCGGGTATTGAGTTACCAGTCCTTTGAAGAAATAAATTGTGAGGAG
GTGTGAGAGGAAAGAATACACTTTATAAAATGTGGCAGTGAAGCTCATGACTGACCTTTG
AAAAGGGGGTGTTGTAAGTTCACTGTTAAAAATCTGGAGGGGACAGTTAAGGGGATTGCC
AAACAGTAGGAGAAGCAGGCACGCGCTCACCAAACAGGGATTTCACTGAGGCTTTTTATC
TTTATCAAATGAACTGAAAGGAACACTTGTTATCATTAAAGTTGAGTGGAAGGCGTTGCC
CTTGGTCCTCCTCTGGTTGTTGCTGTTTACATTCCTTTGTTGAGCCGACGACCCGTCTCG
ATAAGCTTTCTGGCAGATACAAGTTGAACACTTTGGTTTCATGGTCGAGACAGGATCAGA
GACCACAGATACTCACAGCCCATCTGTCTGTTTTCTTCTGTCTTTGCCCATGACTGTATC
TACTGCCTCATTTGATTTACAAGCAAACCCTAGAAAACCTACAAAAATAAGTGTTTTGTA
GCTTATCTAGGAATAATACAGAAAATATTGCTGTTATTTTTGGTGAAGAAAATCAATTTT
GTATAGTTTATTTCAACCTAAATAAAATGTGAATTTTGTTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGTAAGGGGTACGTAGGCCACTTAATCACTGAATAGCTTGGCCTATAGGGCTCTCCT
TGAGTACGCGCGAGTCATTGATAATCCGCCTGGTTCAGTGGCCCCTCTTTGAACTCTCAC
GCTTCGGAGACCTACCTGTTCTTCCAGACGAGAGCACGGAAGGGTACCGTGGTACCCTTC
CGTGCAATCTCTGCTCACGGCACTTTGGAATTATTTCAGTGAAGTCCTAACATTTATCAC
TGTGGATCCAACTATCGGGTATTGAGTTACCAGTCCTTTGAAGAAATAAATTGTGAGGAG
GTGTGAGAGGAAAGAATACACTTTATAAAATGTGGCAGTGAAGCTCATGACTGACCTTTG
AAAAGGGGGTGTTGTAAGTTCACTGTTAAAAATCTGGAGGGGACAGTTAAGGGGATTGCC
AAACAGTAGGAGAAGCAGGCACGCGCTCACCAAACAGGGATTTCACTGAGGCTTTTTATC
TTTATCAAATGAACTGAAAGGAACACTTGTTATCATTAAAGTTGAGTGGAAGGCGTTGCC
CTTGGTCCTCCTCTGGTTGTTGCTGTTTACATTCCTTTGTTGAGCCGACGACCCGTCTCG
ATAAGCTTTCTGGCAGATACAAGTTGAACACTTTGGTTTCATGGTCGAGACAGGATCAGA
GACCACAGATACTCACAGCCCATCTGTCTGTTTTCTTCTGTCTTTGCCCATGACTGTATC
TACTGCCTCATTTGATTTACAAGCAAACCCTAGAAAACCTACAAAAATAAGTGTTTTGTA
GCTTATCTAGGAATAATACAGAAAATATTGCTGTTATTTTTGGTGAAGAAAATCAATTTT
GTATAGTTTATTTCAACCTAAATAAAATGTGAATTTTGTTTAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               445-900, gnl|bosTau2|chr5 (39095990-39096439)
               

               
               445-900, gnl|Hg17|chr12 (42249047-42248600)
               

               
               445-900, gnl|Mm7|chr1 (63599402-63599789)
               


               
               709-885, gnl|bosTau2|chr11 (31450893-31450716)
               

               
               709-885, gnl|Hg17|chr2 (37834974-37834799)
               

               
               709-885, gnl|Mm7|chr7 (94749801-94749964)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               445-900, gnl|bosTau2|chr5 (39095990-39096439)
               

               
               445-900, gnl|Hg17|chr12 (42249047-42248600)
               

               
               445-900, gnl|Mm7|chr1 (63599402-63599789)
               


               
               709-885, gnl|bosTau2|chr11 (31450893-31450716)
               

               
               709-885, gnl|Hg17|chr2 (37834974-37834799)
               

               
               709-885, gnl|Mm7|chr7 (94749801-94749964)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               csk (0.562984)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.562984)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	445-900, gnl\|bosTau2\|chr5 (39095990-39096439)
	445-900, gnl\|Hg17\|chr12 (42249047-42248600)
	445-900, gnl\|Mm7\|chr1 (63599402-63599789)

	709-885, gnl\|bosTau2\|chr11 (31450893-31450716)
	709-885, gnl\|Hg17\|chr2 (37834974-37834799)
	709-885, gnl\|Mm7\|chr7 (94749801-94749964)

	csk (0.562984)
	ova (0.258264)
	aor (0.195274)
	ton (0.1755)
	ski (0.146735)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)
	spc (0.113366)
	ldo (0.0970026)