Non-Coding RNA Search

Ss1.1-Mixg-0007h05.5

Sequence:


               
               ATATCCGATGGAATAACTGTATAGCTGGCCGAGCATTTGTACTCTGCAGTGCAGTAACAG
ATTTTGATTTCATTGTTACCATTGTTGTTCTTAAAAATGTTCTCTCTTTTACAAGGGCCT
TTGGGAAAAATCTTCAGGGGCAAACCTCTGACGTCTTCTTTGCAGCCAGTAGCTTGACTG
CAGTGCTACATTCACTAAATGAAGTGATGGAAAATATTGAAGTGTATCATGAATTTTGGT
TTGAGGAAGCCACCAATTTGGCAACCAAACTTGATATTCAGATGAAACTCCCAGGGAAAT
TTCGCAGAGCTCAGCACAGTAACCTGGACTCTCAGCTAACCTCTGAGAGTTACTATAAAG
AAACTCTAAGTGTTCCAACGGTGGAACACATTATTCAGGAACTGAAGGATATATTTTCAG
AACAGCACCTCAAAGCTCTTAAATGCTTATCTCTGGTACCCTCTGTCATGGGACAGCTCA
AATTCAATACCTCGGAGGAGCACCACGCCGACATGTACAGGAGTGACTTACCTAATCCTG
ACACGCTCTCTGCTGAGCTGCATTGTTGGAGGATCAAGTGGAAACACCGAGGGAAAGACA
TAGAACTTCCCTCCACTATTTATGAAGCCCTCCATCTGCCGGACATCAAGTTTTTTCCTA
ATGTTTATGCGTTGCTGAAGGTCCTGTGTATTCTTCCTGTGATGAAGGTTGAGAATGAAC
GCTATGAGAACGGGCGGAAGCGTCTCAAAGCATACCTGAGGAACACTTTGACAGACCAAA
GGTCAAGCAACCTGGCTTTGCTTAACTTAAATTTTGATATAAAGCATGATTTGGATTTAA
TGGTAGATACATATATCAAACTCTATACAAGTAAGTCAGAGCTGCCTACAGATAATGCAG
AACCCATTGAAAATACCTAAGAGACTTTTAAAATAGGCCTTCTCTTATACTTGATATTTG
AAAAAAAATCTGTTAAGAAATTCAAAAATGTCTTTCAGGAGATCTGTAAGGGGTACGTAG
GCCACTTAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATCCGATGGAATAACTGTATAGCTGGCCGAGCATTTGTACTCTGCAGTGCAGTAACAG
ATTTTGATTTCATTGTTACCATTGTTGTTCTTAAAAATGTTCTCTCTTTTACAAGGGCCT
TTGGGAAAAATCTTCAGGGGCAAACCTCTGACGTCTTCTTTGCAGCCAGTAGCTTGACTG
CAGTGCTACATTCACTAAATGAAGTGATGGAAAATATTGAAGTGTATCATGAATTTTGGT
TTGAGGAAGCCACCAATTTGGCAACCAAACTTGATATTCAGATGAAACTCCCAGGGAAAT
TTCGCAGAGCTCAGCACAGTAACCTGGACTCTCAGCTAACCTCTGAGAGTTACTATAAAG
AAACTCTAAGTGTTCCAACGGTGGAACACATTATTCAGGAACTGAAGGATATATTTTCAG
AACAGCACCTCAAAGCTCTTAAATGCTTATCTCTGGTACCCTCTGTCATGGGACAGCTCA
AATTCAATACCTCGGAGGAGCACCACGCCGACATGTACAGGAGTGACTTACCTAATCCTG
ACACGCTCTCTGCTGAGCTGCATTGTTGGAGGATCAAGTGGAAACACCGAGGGAAAGACA
TAGAACTTCCCTCCACTATTTATGAAGCCCTCCATCTGCCGGACATCAAGTTTTTTCCTA
ATGTTTATGCGTTGCTGAAGGTCCTGTGTATTCTTCCTGTGATGAAGGTTGAGAATGAAC
GCTATGAGAACGGGCGGAAGCGTCTCAAAGCATACCTGAGGAACACTTTGACAGACCAAA
GGTCAAGCAACCTGGCTTTGCTTAACTTAAATTTTGATATAAAGCATGATTTGGATTTAA
TGGTAGATACATATATCAAACTCTATACAAGTAAGTCAGAGCTGCCTACAGATAATGCAG
AACCCATTGAAAATACCTAAGAGACTTTTAAAATAGGCCTTCTCTTATACTTGATATTTG
AAAAAAAATCTGTTAAGAAATTCAAAAATGTCTTTCAGGAGATCTGTAAGGGGTACGTAG
GCCACTTAATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18314563|gb|AAH21992.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18314563|gb|AAH21992.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-696, + strand, RNAz p=0.991089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-696, + strand, RNAz p=0.991089

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               7-345, gnl|bosTau2|chr3 (72126079-72126398)
               


               
               88-321, gnl|bosTau2|chr10 (44842713-44842943)
               

               
               88-321, gnl|Hg17|chr15 (43410467-43410249)
               

               
               88-321, gnl|Mm7|chr7 (94747993-94748199)
               


               
               458-1032, gnl|bosTau2|chr23 (1769015-1769593)
               

               
               458-1032, gnl|Hg17|chr11 (75740005-75739478)
               

               
               458-1032, gnl|Mm7|chr7 (94748356-94748881)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-345, gnl|bosTau2|chr3 (72126079-72126398)
               


               
               88-321, gnl|bosTau2|chr10 (44842713-44842943)
               

               
               88-321, gnl|Hg17|chr15 (43410467-43410249)
               

               
               88-321, gnl|Mm7|chr7 (94747993-94748199)
               


               
               458-1032, gnl|bosTau2|chr23 (1769015-1769593)
               

               
               458-1032, gnl|Hg17|chr11 (75740005-75739478)
               

               
               458-1032, gnl|Mm7|chr7 (94748356-94748881)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nco (0.161734)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	7-345, gnl\|bosTau2\|chr3 (72126079-72126398)

	88-321, gnl\|bosTau2\|chr10 (44842713-44842943)
	88-321, gnl\|Hg17\|chr15 (43410467-43410249)
	88-321, gnl\|Mm7\|chr7 (94747993-94748199)

	458-1032, gnl\|bosTau2\|chr23 (1769015-1769593)
	458-1032, gnl\|Hg17\|chr11 (75740005-75739478)
	458-1032, gnl\|Mm7\|chr7 (94748356-94748881)

	nco (0.161734)
	che (0.136314)
	eru (0.120048)
	med (0.116252)
	ldo (0.0970026)