Non-Coding RNA Search

Ss1.1-Mixg-0008c09.5

Sequence:


               
               CGGCGGCGGTACTGGAGCGTTTGGGTGGGTTATGGATGCAGAATCTCAGGGGGAAGCTGG
CTTTGAGGCTTCTTTCGTCTCACAGCATTTTACCCCAGTCGCATATCCACACAAGTGCTT
CCGTTGAAATATCTCGAAAATGGGAGAAGAAGAATAAAATTGTTTATCCTCCACAGCTGC
CCGGAGAACCTCGAAGACCAGCTGAAATCTACCATTGTCGAAGACAAATAAAGTACAGCA
AAGACAAGATGTGGTATTTAGCAAAACTGATACGAGGAATGTCTATTGACCAGGCTTTGG
CTCAGTTGGAATTCAGTGACAAAAAGGGGGCTCAAATAATTAAAGAGGTTCTCTTAGAAG
CACAAGATATGGCAGTGAGAGACCACAATGTGGAATTCAGATCCAATTTGTATGTAGCTG
AGTCCACCTCAGGGCGAGGCCAGTACCTGAAACGCATCCGATACCACGGCAGAGGTCGCT
TTGGGATTATGGAGAAGGTTTTTTGCCACTATTTTGTGAAGTTGGTGGAAGGCCCCCCAC
CTCCACGTGAGGCACCAAAGACAGCAGTCGCCCACGCCAGAGAGTATATTCAGGAGCTTC
GAAACCGAACTATCACGCATGCTCTCTGATGGGGGTATTCCGACTCCGCAGTGTCTCTGT
TTTACCATTTATTTTCTGAAGCCAACAGAAATTAAAGACCAATGCTTTTTATGAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCGGTACTGGAGCGTTTGGGTGGGTTATGGATGCAGAATCTCAGGGGGAAGCTGG
CTTTGAGGCTTCTTTCGTCTCACAGCATTTTACCCCAGTCGCATATCCACACAAGTGCTT
CCGTTGAAATATCTCGAAAATGGGAGAAGAAGAATAAAATTGTTTATCCTCCACAGCTGC
CCGGAGAACCTCGAAGACCAGCTGAAATCTACCATTGTCGAAGACAAATAAAGTACAGCA
AAGACAAGATGTGGTATTTAGCAAAACTGATACGAGGAATGTCTATTGACCAGGCTTTGG
CTCAGTTGGAATTCAGTGACAAAAAGGGGGCTCAAATAATTAAAGAGGTTCTCTTAGAAG
CACAAGATATGGCAGTGAGAGACCACAATGTGGAATTCAGATCCAATTTGTATGTAGCTG
AGTCCACCTCAGGGCGAGGCCAGTACCTGAAACGCATCCGATACCACGGCAGAGGTCGCT
TTGGGATTATGGAGAAGGTTTTTTGCCACTATTTTGTGAAGTTGGTGGAAGGCCCCCCAC
CTCCACGTGAGGCACCAAAGACAGCAGTCGCCCACGCCAGAGAGTATATTCAGGAGCTTC
GAAACCGAACTATCACGCATGCTCTCTGATGGGGGTATTCCGACTCCGCAGTGTCTCTGT
TTTACCATTTATTTTCTGAAGCCAACAGAAATTAAAGACCAATGCTTTTTATGAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51814367|gb|AAU09483.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51814367|gb|AAU09483.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               43-690, gnl|bosTau2|chr4 (20285886-20285264)
               

               
               43-690, gnl|Hg17|chr4 (57028389-57027808)
               

               
               43-690, gnl|Mm7|chr14 (73647178-73646571)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-690, gnl|bosTau2|chr4 (20285886-20285264)
               

               
               43-690, gnl|Hg17|chr4 (57028389-57027808)
               

               
               43-690, gnl|Mm7|chr14 (73647178-73646571)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               fce (0.543183)
               

               
               lun (0.451467)
               

               
               amn (0.417711)
               

               
               pgl (0.35545)
               

               
               jca (0.34188)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               lun (0.451467)
               

               
               amn (0.417711)
               

               
               pgl (0.35545)
               

               
               jca (0.34188)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

	43-690, gnl\|bosTau2\|chr4 (20285886-20285264)
	43-690, gnl\|Hg17\|chr4 (57028389-57027808)
	43-690, gnl\|Mm7\|chr14 (73647178-73646571)

	fce (0.543183)
	lun (0.451467)
	amn (0.417711)
	pgl (0.35545)
	jca (0.34188)
	che (0.272628)
	cbe (0.239234)
	ece (0.229305)
	hea (0.204499)
	eje (0.197668)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	hyp (0.142837)
	pty (0.142714)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	eep (0.122564)
	ldo (0.0970026)