Ss1.1-Mixg-0008c10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACGTGGCTGATGCC TATGTGACTTTCGTTCGCCACTCTCAGGATGTCCTCCGTGATAAGGTCAATGAGGAGATG TATATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAATGTGATCTGCACCTGG TTGACGGACCGGATGGACTTACAGCTTCACATTTATCAATTGAAAACACTAATTAGGATG GTAAAGAAAACCTATAGAGATTTCCGATTGCAAGGGGTCCTGGACTCAACCTTAAACAGC AAGACCTACGAAACTATCCGGAACCGTCTCACTGTGGAGGAGGCCACCGCCTCTGTGAGC GAGGGTGGGGGCCTGCAGGGGATCAGCATGAAGGACAGTGATGAGGAAGACGAAGAGGAT GATTAGAACACTCGGGCCTGGAGTCCACTAGGACAGAGTCTTGTAATCAATGCATGTCCT TAGTCCATTAGTTAACCCATTAGGGAACTTTCTGTCAACTCCCATGCCCATGAGAAGTGT ACCAATACAGTTGCCATTTTAGCTATGTGGTACCAAGATTAGCAAACAACCTTTAACTCC ACGATTTCCTGAATCCATGTCTATATGTTTACAAGCAATATGGAGCACCATTCTTTAAAT ACCATTTATGGAGAATACATAGCTCTATTGCTAGGTGTATCCCTGTTATCAGCAGAATTC AATGATGCTTCATTAATGTGCTGTGTGTGCATTGACGGTAAATGGAAGTGAGGGCGAGTA CACCGAGTACTTTCTTTGTTTCCCGTATGTGGATGCCAGTTATTTAAATGAGTATAACAA AGTAATTTAACTAAGACACATAGATCTACTTTGTTTTTCGGAAAACAAAAGGCAAGGCTC CAACAGCCAACTTTTGGTTCTTTCTGTTCTCCTAAAACTGCAAAATGAACCCCTGATGTC GTTGTTAGCCCCATCCTTTCACTTATCCAGATAGTTACCCAAAAAAGGATGGCTACATAC CAGTGGTTCGATCTTCCTAATTGCCATGGCAAGGGTGATCCTATATAACATCCAGCACAG TTCAGAGCGACTGTCTTCTATCAAAGTTTATCCTATTAAATCTTACATTTGCTTTTATGT TTCGATAACTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACGTGGCTGATGCC TATGTGACTTTCGTTCGCCACTCTCAGGATGTCCTCCGTGATAAGGTCAATGAGGAGATG TATATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAATGTGATCTGCACCTGG TTGACGGACCGGATGGACTTACAGCTTCACATTTATCAATTGAAAACACTAATTAGGATG GTAAAGAAAACCTATAGAGATTTCCGATTGCAAGGGGTCCTGGACTCAACCTTAAACAGC AAGACCTACGAAACTATCCGGAACCGTCTCACTGTGGAGGAGGCCACCGCCTCTGTGAGC GAGGGTGGGGGCCTGCAGGGGATCAGCATGAAGGACAGTGATGAGGAAGACGAAGAGGAT GATTAGAACACTCGGGCCTGGAGTCCACTAGGACAGAGTCTTGTAATCAATGCATGTCCT TAGTCCATTAGTTAACCCATTAGGGAACTTTCTGTCAACTCCCATGCCCATGAGAAGTGT ACCAATACAGTTGCCATTTTAGCTATGTGGTACCAAGATTAGCAAACAACCTTTAACTCC ACGATTTCCTGAATCCATGTCTATATGTTTACAAGCAATATGGAGCACCATTCTTTAAAT ACCATTTATGGAGAATACATAGCTCTATTGCTAGGTGTATCCCTGTTATCAGCAGAATTC AATGATGCTTCATTAATGTGCTGTGTGTGCATTGACGGTAAATGGAAGTGAGGGCGAGTA CACCGAGTACTTTCTTTGTTTCCCGTATGTGGATGCCAGTTATTTAAATGAGTATAACAA AGTAATTTAACTAAGACACATAGATCTACTTTGTTTTTCGGAAAACAAAAGGCAAGGCTC CAACAGCCAACTTTTGGTTCTTTCTGTTCTCCTAAAACTGCAAAATGAACCCCTGATGTC GTTGTTAGCCCCATCCTTTCACTTATCCAGATAGTTACCCAAAAAAGGATGGCTACATAC CAGTGGTTCGATCTTCCTAATTGCCATGGCAAGGGTGATCCTATATAACATCCAGCACAG TTCAGAGCGACTGTCTTCTATCAAAGTTTATCCTATTAAATCTTACATTTGCTTTTATGT TTCGATAACTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 34-141, gnl|bosTau2|chr22 (30281181-30281074) | |
| 34-141, gnl|canFam2|chr20 (31637889-31637775) | |
| 34-141, gnl|danRer3|chr6 (23353537-23353423) | |
| 34-141, gnl|dasNov1|scaffold_740 (158240-158131) | |
| 34-141, gnl|echTel1|scaffold_314822 (408-520) | |
| 34-141, gnl|galGal2|chr12 (13139922-13140035) | |
| 34-141, gnl|hg17|chr3 (62398804-62398917) | |
| 34-141, gnl|Hg17|chr3 (62398926-62398819) | |
| 34-141, gnl|loxAfr1|scaffold_231496 (536-649) | |
| 34-141, gnl|mm7|chr14 (10227400-10227513) | |
| 34-141, gnl|Mm7|chr14 (10227522-10227415) | |
| 34-141, gnl|monDom2|scaffold_5 (8031634-8031747) | |
| 34-141, gnl|oryCun1|scaffold_203520 (112525-112412) | |
| 34-141, gnl|panTro1|chr2 (64179749-64179862) | |
| 34-141, gnl|rheMac2|chr3 (159856882-159856994) | |
| 34-141, gnl|rn3|chr15 (14280273-14280160) | |
| 34-141, gnl|tetNig1|chr11 (5075111-5075225) | |
| 34-141, gnl|xenTro1|scaffold_703 (537138-537025) | |
| 245-618, gnl|bosTau2|chr22 (30244150-30243776) | |
| 245-618, gnl|Hg17|chr3 (62360302-62359865) | |
| 245-618, gnl|Mm7|chr14 (10189656-10189229) | |
| 654-1149, gnl|bosTau2|chr22 (30243801-30243308) | |
| 654-1149, gnl|Hg17|chr3 (62359891-62359372) | |
| 654-1149, gnl|Mm7|chr14 (10189303-10188731) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-141, gnl|bosTau2|chr22 (30281181-30281074) | |
| 34-141, gnl|canFam2|chr20 (31637889-31637775) | |
| 34-141, gnl|danRer3|chr6 (23353537-23353423) | |
| 34-141, gnl|dasNov1|scaffold_740 (158240-158131) | |
| 34-141, gnl|echTel1|scaffold_314822 (408-520) | |
| 34-141, gnl|galGal2|chr12 (13139922-13140035) | |
| 34-141, gnl|hg17|chr3 (62398804-62398917) | |
| 34-141, gnl|Hg17|chr3 (62398926-62398819) | |
| 34-141, gnl|loxAfr1|scaffold_231496 (536-649) | |
| 34-141, gnl|mm7|chr14 (10227400-10227513) | |
| 34-141, gnl|Mm7|chr14 (10227522-10227415) | |
| 34-141, gnl|monDom2|scaffold_5 (8031634-8031747) | |
| 34-141, gnl|oryCun1|scaffold_203520 (112525-112412) | |
| 34-141, gnl|panTro1|chr2 (64179749-64179862) | |
| 34-141, gnl|rheMac2|chr3 (159856882-159856994) | |
| 34-141, gnl|rn3|chr15 (14280273-14280160) | |
| 34-141, gnl|tetNig1|chr11 (5075111-5075225) | |
| 34-141, gnl|xenTro1|scaffold_703 (537138-537025) | |
| 245-618, gnl|bosTau2|chr22 (30244150-30243776) | |
| 245-618, gnl|Hg17|chr3 (62360302-62359865) | |
| 245-618, gnl|Mm7|chr14 (10189656-10189229) | |
| 654-1149, gnl|bosTau2|chr22 (30243801-30243308) | |
| 654-1149, gnl|Hg17|chr3 (62359891-62359372) | |
| 654-1149, gnl|Mm7|chr14 (10189303-10188731) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| spc (0.906927) | |
| sug (0.763747) | |
| fhi (0.508733) | |
| fco (0.314416) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| pgl (0.118483) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.906927) | |
| sug (0.763747) | |
| fhi (0.508733) | |
| fco (0.314416) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| pgl (0.118483) |