Non-Coding RNA Search

Ss1.1-Mixg-0008c11.3

Sequence:


               
               GTCAGGTTCATAACTTGCTGAGCCACAATGGGAAGTCCCTAGGCATGTATTTCAATAGCA
TGATTTGTTTGGTGTTTCATTGGATGGATACACCATAGTTTATAGAACCAATCATGTTGC
TATTCTGTCTGATAATTTCTTATGATTGTCTAACAACATCTGGGTAAGCGCCCTTGCCTT
GAGCAGGTAGCTTTGAGCATATCTGTAATAATTTCTTTAAAATCAGGTTCAAGAAGTCCA
ATACCTGGATCTATCTAGTATTTTTAGGGTTTTTAATACATGTTGCTATATGCCCCCAGA
AGCATTGCCATAGCTGTGACATTACCACATCTGACAGCTCCTGTTTACCATCAGATTTCC
CAGCATTGCATATTATTTAAAATTTTCTTAATTTCTTTGCCCATGTACAAAATTCTCAAG
CGCCGCAGGATTTGGAAAGGCTCAGACTATATTAAGAACTCCATGTTGAGAAGGCTGACA
AACAGGCAGTCAACTGTCAGGTAAGATTCCAGGGAAGATTCAAGAAGTTTTTGCAGTGCT
TCTTTGCTCTCGGGCTTGAGTATAGGCAATGAATTACTGACTCTTTGCTGGTCCCAGGAA
TAAAAAACTTGGAAGCAAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGGTTCATAACTTGCTGAGCCACAATGGGAAGTCCCTAGGCATGTATTTCAATAGCA
TGATTTGTTTGGTGTTTCATTGGATGGATACACCATAGTTTATAGAACCAATCATGTTGC
TATTCTGTCTGATAATTTCTTATGATTGTCTAACAACATCTGGGTAAGCGCCCTTGCCTT
GAGCAGGTAGCTTTGAGCATATCTGTAATAATTTCTTTAAAATCAGGTTCAAGAAGTCCA
ATACCTGGATCTATCTAGTATTTTTAGGGTTTTTAATACATGTTGCTATATGCCCCCAGA
AGCATTGCCATAGCTGTGACATTACCACATCTGACAGCTCCTGTTTACCATCAGATTTCC
CAGCATTGCATATTATTTAAAATTTTCTTAATTTCTTTGCCCATGTACAAAATTCTCAAG
CGCCGCAGGATTTGGAAAGGCTCAGACTATATTAAGAACTCCATGTTGAGAAGGCTGACA
AACAGGCAGTCAACTGTCAGGTAAGATTCCAGGGAAGATTCAAGAAGTTTTTGCAGTGCT
TCTTTGCTCTCGGGCTTGAGTATAGGCAATGAATTACTGACTCTTTGCTGGTCCCAGGAA
TAAAAAACTTGGAAGCAAGAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               118-236, - strand, RNAz p=0.881233
               

               
               269-385, - strand, RNAz p=0.948661
               

               
               516-624, + strand, RNAz p=0.853419

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-236, - strand, RNAz p=0.881233
               

               
               269-385, - strand, RNAz p=0.948661
               

               
               516-624, + strand, RNAz p=0.853419

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               39-624, gnl|bosTau2|chr3 (38034161-38034759)
               

               
               39-624, gnl|Hg17|chr1 (101049018-101048420)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-624, gnl|bosTau2|chr3 (38034161-38034759)
               

               
               39-624, gnl|Hg17|chr1 (101049018-101048420)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

	118-236, - strand, RNAz p=0.881233
	269-385, - strand, RNAz p=0.948661
	516-624, + strand, RNAz p=0.853419

	39-624, gnl\|bosTau2\|chr3 (38034161-38034759)
	39-624, gnl\|Hg17\|chr1 (101049018-101048420)