Ss1.1-Mixg-0008e10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGGGAGGCGCGGGACGGCGCGGCGTGGAGGGCGCGCGGGCGGCGACATGGAGGACGGC GTGCTCAAGGAGGGCTTCCTCGTCAAGAGGGGTCACATTGTCCACAACTGGAAGGTGCGA TGGTTCATCCTTCGGCAGAACACGCTGCTGTACTATAAGCTCGAGGCGGGTCGGAAAGTG AACCCTCCCAAGGGCCGGATCCTTCTGGATGGCTGCACCATCACCTGCCCCTGCCTGGAG TATGAAAACCGACCGCTGCTCATTAAGCTGAAAACGCAGACATCTACGGAGTACTTCCTG GAGGCCTGTTCTCGAGAGGAGAGGGATGCCTGGGCCTTTGAGATAACAGGAGCTATTCAC GCTGGGCAGCCCGGGAAGGTCCAGCAACTCCACATATTGAAAAACTCCTTCAAGCTGCCC CCTCACATCAGCCTGCATCGCATCATAGACAAGATGCATGACAGCAGCAGTGGAATCCGG CCAAGCCCCAACATGGAGCAGGGAAGCACCTACAAAAAGACCTTCATAGGCTCCTCCCTC GTGGACTGGCTCATCTCCAACAGCTTCGCAGCCAGCCGTCTGGAGGCAGTGACCTTGGCC TCCATGCTCATGGAGGAGAATTTCCTTAGGCCGGTGGGCGCCCGAAGCACAGGAGCCATT CGCTCTGGGGATCTGGTTGAGCAGTTTCTGGATGACTCCACGGCCCTGTACACTTTTGCT GAGAGCTGCAAGAAAAAGATAAGCCCCAAGGAAGAAATAAGTCTCAGCACTGTGGAGTTA AGTGGAACAGTGGTGAAACAAGGCTATCTGGCCAAACAGGGGCACAAGAGGAAAAACTGG AAGGTGCGGCGCTTCGTTCTGAGGAAGGACCCGGCTTTCCTGCATTACTACGACCCTTCC AAAGAAGAGAACCGGCCTGTGGGTGGGTTTTCTCTCCGTGGTTCACTCGTGTCTGCGCTG GAGGATAACGGCGTTCCCACTGGGGTTAAAGGGAATGTCCAGGGAAATCTCTTCAAAGTG ATTACTAAGGATGACACACACTATTATATCCAGGCCAGCAGCAAGGCTGAGCGTTCAGAG TGGATCGAAGCTATCAAACAGCTAACGTGACAAGATCTTAAGGGTGTAGCACCAGGATTC CTCCCTCCTACCGGATGACACAGACAGGATTTCCTGGAAAATGGGGGTGTGTTGAGACTT TTAACTTTTATATTTTGTACTGTTTTGGAGTGAGCTTGGTGAAGTTCCTCAGATTACAGT CAGCAGTGGTGCTATTTATTTCCTTCCCCACTCTCACGTTAACATGGAGGAAATGCTGGA ATAGTCATTAGGCATCCACATTTTGACTTTTGCCCATCATCACAACCAGCCATTCCTTGG GCACCAAAGTCAGATCCCTTTGTTACACTAACTGGCCATGTTGTAAAACTAAATAAAACA CTATCGTCTCATAGTGGCACTCTCTGAAATGCTGTCAGCAACTCCTAACTCCTTTGGAAA TAATAAAAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGGGAGGCGCGGGACGGCGCGGCGTGGAGGGCGCGCGGGCGGCGACATGGAGGACGGC GTGCTCAAGGAGGGCTTCCTCGTCAAGAGGGGTCACATTGTCCACAACTGGAAGGTGCGA TGGTTCATCCTTCGGCAGAACACGCTGCTGTACTATAAGCTCGAGGCGGGTCGGAAAGTG AACCCTCCCAAGGGCCGGATCCTTCTGGATGGCTGCACCATCACCTGCCCCTGCCTGGAG TATGAAAACCGACCGCTGCTCATTAAGCTGAAAACGCAGACATCTACGGAGTACTTCCTG GAGGCCTGTTCTCGAGAGGAGAGGGATGCCTGGGCCTTTGAGATAACAGGAGCTATTCAC GCTGGGCAGCCCGGGAAGGTCCAGCAACTCCACATATTGAAAAACTCCTTCAAGCTGCCC CCTCACATCAGCCTGCATCGCATCATAGACAAGATGCATGACAGCAGCAGTGGAATCCGG CCAAGCCCCAACATGGAGCAGGGAAGCACCTACAAAAAGACCTTCATAGGCTCCTCCCTC GTGGACTGGCTCATCTCCAACAGCTTCGCAGCCAGCCGTCTGGAGGCAGTGACCTTGGCC TCCATGCTCATGGAGGAGAATTTCCTTAGGCCGGTGGGCGCCCGAAGCACAGGAGCCATT CGCTCTGGGGATCTGGTTGAGCAGTTTCTGGATGACTCCACGGCCCTGTACACTTTTGCT GAGAGCTGCAAGAAAAAGATAAGCCCCAAGGAAGAAATAAGTCTCAGCACTGTGGAGTTA AGTGGAACAGTGGTGAAACAAGGCTATCTGGCCAAACAGGGGCACAAGAGGAAAAACTGG AAGGTGCGGCGCTTCGTTCTGAGGAAGGACCCGGCTTTCCTGCATTACTACGACCCTTCC AAAGAAGAGAACCGGCCTGTGGGTGGGTTTTCTCTCCGTGGTTCACTCGTGTCTGCGCTG GAGGATAACGGCGTTCCCACTGGGGTTAAAGGGAATGTCCAGGGAAATCTCTTCAAAGTG ATTACTAAGGATGACACACACTATTATATCCAGGCCAGCAGCAAGGCTGAGCGTTCAGAG TGGATCGAAGCTATCAAACAGCTAACGTGACAAGATCTTAAGGGTGTAGCACCAGGATTC CTCCCTCCTACCGGATGACACAGACAGGATTTCCTGGAAAATGGGGGTGTGTTGAGACTT TTAACTTTTATATTTTGTACTGTTTTGGAGTGAGCTTGGTGAAGTTCCTCAGATTACAGT CAGCAGTGGTGCTATTTATTTCCTTCCCCACTCTCACGTTAACATGGAGGAAATGCTGGA ATAGTCATTAGGCATCCACATTTTGACTTTTGCCCATCATCACAACCAGCCATTCCTTGG GCACCAAAGTCAGATCCCTTTGTTACACTAACTGGCCATGTTGTAAAACTAAATAAAACA CTATCGTCTCATAGTGGCACTCTCTGAAATGCTGTCAGCAACTCCTAACTCCTTTGGAAA TAATAAAAATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 718-820, + strand, RNAz p=0.758271 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 718-820, + strand, RNAz p=0.758271 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 249-437, gnl|bosTau2|chr10 (54242839-54243027) | |
| 249-437, gnl|Hg17|chr14 (66932060-66931872) | |
| 249-437, gnl|Mm7|chr12 (76854992-76854804) | |
| 528-716, gnl|bosTau2|chr10 (54244903-54245091) | |
| 528-716, gnl|canFam2|chr8 (44414141-44414282) | |
| 528-716, gnl|danRer3|chr13 (34596429-34596291) | |
| 528-716, gnl|dasNov1|scaffold_46525 (8698-8557) | |
| 528-716, gnl|echTel1|scaffold_235592 (2413-2288) | |
| 528-716, gnl|galGal2|chr5 (25855339-25855498) | |
| 528-716, gnl|hg17|chr14 (66929107-66929248) | |
| 528-716, gnl|Hg17|chr14 (66929321-66929133) | |
| 528-716, gnl|loxAfr1|scaffold_2993 (20800-20660) | |
| 528-716, gnl|mm7|chr12 (76853035-76853176) | |
| 528-716, gnl|Mm7|chr12 (76853249-76853061) | |
| 528-716, gnl|monDom2|scaffold_8 (82628458-82628603) | |
| 528-716, gnl|oryCun1|scaffold_73341 (719-860) | |
| 528-716, gnl|panTro1|chr15 (66544846-66544987) | |
| 528-716, gnl|rheMac2|chr7 (130498394-130498535) | |
| 528-716, gnl|rn3|chr6 (101533193-101533334) | |
| 528-716, gnl|tetNig1|chr10 (11543583-11543462) | |
| 718-820, gnl|bosTau2|chr10 (54245315-54245417) | |
| 718-820, gnl|canFam2|chr8 (44413830-44413938) | |
| 718-820, gnl|danRer3|chr13 (34596602-34596497) | |
| 718-820, gnl|dasNov1|scaffold_46525 (8864-8756) | |
| 718-820, gnl|echTel1|scaffold_235592 (3576-3468) | |
| 718-820, gnl|galGal2|chr5 (25854922-25855028) | |
| 718-820, gnl|hg17|chr14 (66928794-66928902) | |
| 718-820, gnl|Hg17|chr14 (66928897-66928795) | |
| 718-820, gnl|loxAfr1|scaffold_2993 (21531-21423) | |
| 718-820, gnl|mm7|chr12 (76852747-76852855) | |
| 718-820, gnl|Mm7|chr12 (76852850-76852748) | |
| 718-820, gnl|monDom2|scaffold_8 (82628146-82628258) | |
| 718-820, gnl|oryCun1|scaffold_73341 (472-580) | |
| 718-820, gnl|panTro1|chr15 (66544532-66544640) | |
| 718-820, gnl|rheMac2|chr7 (130498081-130498189) | |
| 718-820, gnl|rn3|chr6 (101532905-101533013) | |
| 718-820, gnl|tetNig1|chr10 (11543751-11543643) | |
| 982-1511, gnl|bosTau2|chr10 (54248755-54249260) | |
| 982-1511, gnl|Hg17|chr14 (66923927-66923418) | |
| 982-1511, gnl|Mm7|chr12 (76847980-76847379) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-437, gnl|bosTau2|chr10 (54242839-54243027) | |
| 249-437, gnl|Hg17|chr14 (66932060-66931872) | |
| 249-437, gnl|Mm7|chr12 (76854992-76854804) | |
| 528-716, gnl|bosTau2|chr10 (54244903-54245091) | |
| 528-716, gnl|canFam2|chr8 (44414141-44414282) | |
| 528-716, gnl|danRer3|chr13 (34596429-34596291) | |
| 528-716, gnl|dasNov1|scaffold_46525 (8698-8557) | |
| 528-716, gnl|echTel1|scaffold_235592 (2413-2288) | |
| 528-716, gnl|galGal2|chr5 (25855339-25855498) | |
| 528-716, gnl|hg17|chr14 (66929107-66929248) | |
| 528-716, gnl|Hg17|chr14 (66929321-66929133) | |
| 528-716, gnl|loxAfr1|scaffold_2993 (20800-20660) | |
| 528-716, gnl|mm7|chr12 (76853035-76853176) | |
| 528-716, gnl|Mm7|chr12 (76853249-76853061) | |
| 528-716, gnl|monDom2|scaffold_8 (82628458-82628603) | |
| 528-716, gnl|oryCun1|scaffold_73341 (719-860) | |
| 528-716, gnl|panTro1|chr15 (66544846-66544987) | |
| 528-716, gnl|rheMac2|chr7 (130498394-130498535) | |
| 528-716, gnl|rn3|chr6 (101533193-101533334) | |
| 528-716, gnl|tetNig1|chr10 (11543583-11543462) | |
| 718-820, gnl|bosTau2|chr10 (54245315-54245417) | |
| 718-820, gnl|canFam2|chr8 (44413830-44413938) | |
| 718-820, gnl|danRer3|chr13 (34596602-34596497) | |
| 718-820, gnl|dasNov1|scaffold_46525 (8864-8756) | |
| 718-820, gnl|echTel1|scaffold_235592 (3576-3468) | |
| 718-820, gnl|galGal2|chr5 (25854922-25855028) | |
| 718-820, gnl|hg17|chr14 (66928794-66928902) | |
| 718-820, gnl|Hg17|chr14 (66928897-66928795) | |
| 718-820, gnl|loxAfr1|scaffold_2993 (21531-21423) | |
| 718-820, gnl|mm7|chr12 (76852747-76852855) | |
| 718-820, gnl|Mm7|chr12 (76852850-76852748) | |
| 718-820, gnl|monDom2|scaffold_8 (82628146-82628258) | |
| 718-820, gnl|oryCun1|scaffold_73341 (472-580) | |
| 718-820, gnl|panTro1|chr15 (66544532-66544640) | |
| 718-820, gnl|rheMac2|chr7 (130498081-130498189) | |
| 718-820, gnl|rn3|chr6 (101532905-101533013) | |
| 718-820, gnl|tetNig1|chr10 (11543751-11543643) | |
| 982-1511, gnl|bosTau2|chr10 (54248755-54249260) | |
| 982-1511, gnl|Hg17|chr14 (66923927-66923418) | |
| 982-1511, gnl|Mm7|chr12 (76847980-76847379) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| col (0.195008) | |
| sin (0.174948) | |
| rec (0.17307) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| sin (0.174948) | |
| rec (0.17307) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| eje (0.0988338) |