Non-Coding RNA Search

Ss1.1-Mixg-0008f04.3.5

Sequence:


               
               TAATCTCCCCCATTCCTTCAATCTTTATTATATGAATAAAAGAACTTGAGACAATTTAGC
TTAATTTTAATGTTTCCCAAGCATTACTTTGACCATGTACCCAGGTTTAAGTTATGAACA
TTGACAGTGTCCATTTATATAACCACACTTGAAGTTGTTAACGACTTAACCATTTTCTAA
TAATTAGCCTATTTTCTACACTGCTTATTCACATATGTCCATTAACAAATGGAATGTTGT
CTGTTACATTTATTGGTTTGTGAGTGTTTTCTGGAAAACTGCAGTGTCTGTGAAGACCAA
TTTCCATGCTGGCATTGCATGCAGCCAAATATTAATGCACAGAGGCACAGAATTAGAGCA
ACAAGAGAGCATATTCAAACACTAGCACGCCCCATCCCCCCTTTTATTGCTTGTTTTGCT
TAGTACTTCTTAAAACAAAAATAAGAATCTCAAATTCAACGTTCAACTGCCAAAGAAATA
ATTACAGCAGGGCACATACTTAGGGCTCGAATGAGATTGTAAGCACTAGCTGGCGCAAAA
CAGTAGACGTTGGTTTTTATATATATGACCTTGTTACCTAAAACTCTTCTCAACCAGGGT
CTTCCAAACAAATTGTTAATTCATACCAACATGATTTAGGTTCAAGCATACACATGGAAT
AACAGTGTGTTCTTTGGGATTTTAAGTGAATACAACTCTGACTATCCAAATTTGAATTCA
GGTCTCTGGGAAGTAAAAAGCTTATTTGTACTAAGCAACTGTGCTACACTTCTAATGCAG
TTAAGTCATTTGTGATGATTATATCTAGACTATCCTTGGTTTCATCCAGTAAAATGCACA
GGGTACAAACAGGAAAGCATGCCAGCCAGTTAAGAGTTCAACAATGCATGATTTTTATTC
TCTTGCTCTGAGAGCTTGTATCAAAAAAATATATATTAAACCAAGGAAAATAACCAAAGA
TTTAAGGGCCTCTTGTGCTTTAAAAAGGAAAAAAAAGGCAGCCACTAATTTGCTCAGATG
TAGCAGGCTTAGTGGTCCTGTATCTGAAAATTTTAAAAATGTTTTATAAGATAGGAGGAA
GGGGAAAACATTCACTACCCCTTTCCCAAATTTAAACAGAGGGCAGCAGACATCCTTTAC
ACCCAAATAAAACTATGGGAGCAGTTCACATGTGACCAAGGTGAATGCAGAATGGAGATG
TTCTAAACACAGCTAGGACTCTCAGCAAAGCTAATACACTAAAATCATATGATTACATTT
TTAAAGAAAATGCACAAAAACCAAATAGGAATTTTGAGATTTTTCATTTGAAGGTAAATC
TTAATGCTATTAAATTCACAAATATGCTAATTTAAATACCCAATTCTATTATCTAAAACA
CACATTGCAAACATACAAATATCTATTCTCTCCACATGTCAGAGCCCACTCATTTCATGG
TTTGGAAATGGGGAGAATAAATTTCCCCTTAAACTGCAAGTCAGCAGGTGTTTCTTTACA
GTTAACTTTAGCAAAATTCATACAAAATAGTAATTAACAATGATCTTCTTTACTTGTTAA
CTCACAAGGAAACACCTTCAAAACTGCATTTTGTTAGAGTTTCTGTACTAAAATGTAGAA
AAACTGAACTACACAAATATTGAAAAGTTAAAAATTCCTTAATTTTTTATTCCTGGTACC
ACTACCACAATTTACAGGGCAATATACCTGATGTAATGAAAAGAAAAAGAAAAAGACAAA
GCTACAACAGATAAAAGACCTCAGGAATGTACATCTAATTGACACTACATTGCATTAATC
AATAGCTGCACTTTTTGCAAACTGTGGCTATGACAGTCCTGAACAAGAAGGGTTTCCTGT
TTAAGCTGCAGTAACTTTTCTGACTATGGATCATCGTTCCTTCTGTGGCAGATTTTTACA
GTTCCTCTAATGCATTTGGGACGACTGTCTCAAAGTAACCTGCAGCTTTCCTGACAACTC
CTCGCTCTCTCTCCTGCTAAGAACTGTAGCCCTTTTCTGCTGAGTTTTTAGAACCTTCTG
CTACCATATCCACCACTTCCACCACCAGATCCATAACCACCACCATAGGGACTGCCCGAG
CTTCTTCCACCAAAACTGCCCCCCTTCATGGGTCCATAATTTGATTGTTGTTGTCCACTA
TAATTTCCAAAATCATTATAGTTCCCACCACCACCATAGTTACCACCTCCAAAATTTCCT
CCTTCATTGTAACCATCATATCCTCCACCACCGCCACCATATCCACCACCTTGGTTCCCA
TATCCTGGTCCACCACCACCATAGCCTCCTCTACTACTATAACCAGGACCACCACCATAG
TTGCCACCATCACCTCCAAATCCATTATATCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATCTCCCCCATTCCTTCAATCTTTATTATATGAATAAAAGAACTTGAGACAATTTAGC
TTAATTTTAATGTTTCCCAAGCATTACTTTGACCATGTACCCAGGTTTAAGTTATGAACA
TTGACAGTGTCCATTTATATAACCACACTTGAAGTTGTTAACGACTTAACCATTTTCTAA
TAATTAGCCTATTTTCTACACTGCTTATTCACATATGTCCATTAACAAATGGAATGTTGT
CTGTTACATTTATTGGTTTGTGAGTGTTTTCTGGAAAACTGCAGTGTCTGTGAAGACCAA
TTTCCATGCTGGCATTGCATGCAGCCAAATATTAATGCACAGAGGCACAGAATTAGAGCA
ACAAGAGAGCATATTCAAACACTAGCACGCCCCATCCCCCCTTTTATTGCTTGTTTTGCT
TAGTACTTCTTAAAACAAAAATAAGAATCTCAAATTCAACGTTCAACTGCCAAAGAAATA
ATTACAGCAGGGCACATACTTAGGGCTCGAATGAGATTGTAAGCACTAGCTGGCGCAAAA
CAGTAGACGTTGGTTTTTATATATATGACCTTGTTACCTAAAACTCTTCTCAACCAGGGT
CTTCCAAACAAATTGTTAATTCATACCAACATGATTTAGGTTCAAGCATACACATGGAAT
AACAGTGTGTTCTTTGGGATTTTAAGTGAATACAACTCTGACTATCCAAATTTGAATTCA
GGTCTCTGGGAAGTAAAAAGCTTATTTGTACTAAGCAACTGTGCTACACTTCTAATGCAG
TTAAGTCATTTGTGATGATTATATCTAGACTATCCTTGGTTTCATCCAGTAAAATGCACA
GGGTACAAACAGGAAAGCATGCCAGCCAGTTAAGAGTTCAACAATGCATGATTTTTATTC
TCTTGCTCTGAGAGCTTGTATCAAAAAAATATATATTAAACCAAGGAAAATAACCAAAGA
TTTAAGGGCCTCTTGTGCTTTAAAAAGGAAAAAAAAGGCAGCCACTAATTTGCTCAGATG
TAGCAGGCTTAGTGGTCCTGTATCTGAAAATTTTAAAAATGTTTTATAAGATAGGAGGAA
GGGGAAAACATTCACTACCCCTTTCCCAAATTTAAACAGAGGGCAGCAGACATCCTTTAC
ACCCAAATAAAACTATGGGAGCAGTTCACATGTGACCAAGGTGAATGCAGAATGGAGATG
TTCTAAACACAGCTAGGACTCTCAGCAAAGCTAATACACTAAAATCATATGATTACATTT
TTAAAGAAAATGCACAAAAACCAAATAGGAATTTTGAGATTTTTCATTTGAAGGTAAATC
TTAATGCTATTAAATTCACAAATATGCTAATTTAAATACCCAATTCTATTATCTAAAACA
CACATTGCAAACATACAAATATCTATTCTCTCCACATGTCAGAGCCCACTCATTTCATGG
TTTGGAAATGGGGAGAATAAATTTCCCCTTAAACTGCAAGTCAGCAGGTGTTTCTTTACA
GTTAACTTTAGCAAAATTCATACAAAATAGTAATTAACAATGATCTTCTTTACTTGTTAA
CTCACAAGGAAACACCTTCAAAACTGCATTTTGTTAGAGTTTCTGTACTAAAATGTAGAA
AAACTGAACTACACAAATATTGAAAAGTTAAAAATTCCTTAATTTTTTATTCCTGGTACC
ACTACCACAATTTACAGGGCAATATACCTGATGTAATGAAAAGAAAAAGAAAAAGACAAA
GCTACAACAGATAAAAGACCTCAGGAATGTACATCTAATTGACACTACATTGCATTAATC
AATAGCTGCACTTTTTGCAAACTGTGGCTATGACAGTCCTGAACAAGAAGGGTTTCCTGT
TTAAGCTGCAGTAACTTTTCTGACTATGGATCATCGTTCCTTCTGTGGCAGATTTTTACA
GTTCCTCTAATGCATTTGGGACGACTGTCTCAAAGTAACCTGCAGCTTTCCTGACAACTC
CTCGCTCTCTCTCCTGCTAAGAACTGTAGCCCTTTTCTGCTGAGTTTTTAGAACCTTCTG
CTACCATATCCACCACTTCCACCACCAGATCCATAACCACCACCATAGGGACTGCCCGAG
CTTCTTCCACCAAAACTGCCCCCCTTCATGGGTCCATAATTTGATTGTTGTTGTCCACTA
TAATTTCCAAAATCATTATAGTTCCCACCACCACCATAGTTACCACCTCCAAAATTTCCT
CCTTCATTGTAACCATCATATCCTCCACCACCGCCACCATATCCACCACCTTGGTTCCCA
TATCCTGGTCCACCACCACCATAGCCTCCTCTACTACTATAACCAGGACCACCACCATAG
TTGCCACCATCACCTCCAAATCCATTATATCCACCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               O70592_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               O70592_RAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1762-1881, - strand, RNAz p=0.570983

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1762-1881, - strand, RNAz p=0.570983

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1644-2366, gnl|bosTau2|chr23 (567209-567921)
               

               
               1644-2366, gnl|Hg17|chr1 (113705779-113705060)
               

               
               1644-2366, gnl|Mm7|chr15 (77786371-77785677)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1644-2366, gnl|bosTau2|chr23 (567209-567921)
               

               
               1644-2366, gnl|Hg17|chr1 (113705779-113705060)
               

               
               1644-2366, gnl|Mm7|chr15 (77786371-77785677)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

Help | Less info


               
               thg (1.01433)
               

               
               cbe (0.956938)
               

               
               sug (0.636456)
               

               
               spl (0.572738)
               

               
               rec (0.519211)
               

               
               eye (0.511509)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.01433)
               

               
               cbe (0.956938)
               

               
               sug (0.636456)
               

               
               spl (0.572738)
               

               
               rec (0.519211)
               

               
               eye (0.511509)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1644-2366, gnl\|bosTau2\|chr23 (567209-567921)
	1644-2366, gnl\|Hg17\|chr1 (113705779-113705060)
	1644-2366, gnl\|Mm7\|chr15 (77786371-77785677)

	thg (1.01433)
	cbe (0.956938)
	sug (0.636456)
	spl (0.572738)
	rec (0.519211)
	eye (0.511509)
	ski (0.440205)
	lin (0.436808)
	che (0.408942)
	ova (0.387397)
	tra (0.369276)
	fty (0.351679)
	sin (0.349895)
	nca (0.273748)
	nmm (0.265604)
	ret (0.257467)
	bla (0.248694)
	mgp (0.230681)
	ece (0.229305)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	cut (0.169924)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	lnt (0.142308)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)