Non-Coding RNA Search

Ss1.1-Mixg-0008h10.3

Sequence:


               
               CCCGGGGGGCAGCCCAGCCCAGCGCCGCCGCACCAGGGGGACTCCCCCAGGGCTGGTAGC
CCAAAGCTGCTGTTATAGCCGCCATGGGCAGGTGAATTCCTCACCCCCCAATACAGGCAG
CCAAGAACTGAAGCAGGGGGAGCAGGAAACAGAGAATAGGTCTGCCAGTGAGGAGCAGGT
CTTGTCACAGGATGGGTCTGGGGAAGAACCCTTGCACACAGTTCCTCCACAGGCCCAGGC
TCCACCAGCCCGGTCCTGGACAATGGGTGGGGACATGTTCAACGCCAGGTTCATTCGAAA
CTTGCAGGAAAGTCGCAGTACCAGGCCTTGGTGACCACAGCTCCCTCTCACACCTTTAAA
GTCAGTATTATTTCTCTCTCACACACAGGACGTAGCCAAAGCTTACCCTCACAGTGGATA
TATCCATCCTTTCATTCATTGGACAGGCGTTCTTATCAGTGCCAAGTCATTTGTATCTTA
TTTTTAACCACAGAAATAAAGTATTTATTTTTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGGGGCAGCCCAGCCCAGCGCCGCCGCACCAGGGGGACTCCCCCAGGGCTGGTAGC
CCAAAGCTGCTGTTATAGCCGCCATGGGCAGGTGAATTCCTCACCCCCCAATACAGGCAG
CCAAGAACTGAAGCAGGGGGAGCAGGAAACAGAGAATAGGTCTGCCAGTGAGGAGCAGGT
CTTGTCACAGGATGGGTCTGGGGAAGAACCCTTGCACACAGTTCCTCCACAGGCCCAGGC
TCCACCAGCCCGGTCCTGGACAATGGGTGGGGACATGTTCAACGCCAGGTTCATTCGAAA
CTTGCAGGAAAGTCGCAGTACCAGGCCTTGGTGACCACAGCTCCCTCTCACACCTTTAAA
GTCAGTATTATTTCTCTCTCACACACAGGACGTAGCCAAAGCTTACCCTCACAGTGGATA
TATCCATCCTTTCATTCATTGGACAGGCGTTCTTATCAGTGCCAAGTCATTTGTATCTTA
TTTTTAACCACAGAAATAAAGTATTTATTTTTATCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-275, - strand, RNAz p=0.651531

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-275, - strand, RNAz p=0.651531

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               157-509, gnl|bosTau2|chr23 (20855535-20855172)
               

               
               157-509, gnl|canFam2|chr12 (3456917-3457727)
               

               
               157-509, gnl|hg17|chr6 (30721741-30722591)
               

               
               157-509, gnl|Hg17|chr6 (30722222-30722570)
               

               
               157-509, gnl|mm7|chr17 (34002553-34001772)
               

               
               157-509, gnl|Mm7|chr17 (34002092-34001792)
               

               
               157-509, gnl|monDom2|scaffold_42 (18677251-18676481)
               

               
               157-509, gnl|oryCun1|scaffold_213280 (5326-4533)
               

               
               157-509, gnl|panTro1|chr5 (31183006-31183863)
               

               
               157-509, gnl|rheMac2|chr4 (30226851-30227709)
               

               
               157-509, gnl|rn3|chr20 (3004808-3005590)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-509, gnl|bosTau2|chr23 (20855535-20855172)
               

               
               157-509, gnl|canFam2|chr12 (3456917-3457727)
               

               
               157-509, gnl|hg17|chr6 (30721741-30722591)
               

               
               157-509, gnl|Hg17|chr6 (30722222-30722570)
               

               
               157-509, gnl|mm7|chr17 (34002553-34001772)
               

               
               157-509, gnl|Mm7|chr17 (34002092-34001792)
               

               
               157-509, gnl|monDom2|scaffold_42 (18677251-18676481)
               

               
               157-509, gnl|oryCun1|scaffold_213280 (5326-4533)
               

               
               157-509, gnl|panTro1|chr5 (31183006-31183863)
               

               
               157-509, gnl|rheMac2|chr4 (30226851-30227709)
               

               
               157-509, gnl|rn3|chr20 (3004808-3005590)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)

	157-509, gnl\|bosTau2\|chr23 (20855535-20855172)
	157-509, gnl\|canFam2\|chr12 (3456917-3457727)
	157-509, gnl\|hg17\|chr6 (30721741-30722591)
	157-509, gnl\|Hg17\|chr6 (30722222-30722570)
	157-509, gnl\|mm7\|chr17 (34002553-34001772)
	157-509, gnl\|Mm7\|chr17 (34002092-34001792)
	157-509, gnl\|monDom2\|scaffold_42 (18677251-18676481)
	157-509, gnl\|oryCun1\|scaffold_213280 (5326-4533)
	157-509, gnl\|panTro1\|chr5 (31183006-31183863)
	157-509, gnl\|rheMac2\|chr4 (30226851-30227709)
	157-509, gnl\|rn3\|chr20 (3004808-3005590)