Non-Coding RNA Search

Ss1.1-Mixg-0009b04.3

Sequence:


               
               CGAAAGCCAGGAGGGGGAAACCAGAAAGGAGAGGGAAGAGGAGCAAGTGGCAGACCACTC
CCTGACCGACGCCAGCATGGGCTCCTCCACCATCACCGTGAGCTTCCTCCTCGTTCTGGT
GTTTCAGTTCCCAGGGCAAACCAGAGCGAACCCTGTGTACGGCTCCGTGTCCAATGCAGA
CCTGATGGATTTCAAGAATTTGCTGGACCACTTGGAGGACAAGACGCCTTTAGAAGATGA
GGCTATGCCCCCACAAGTACTAAGCGAGCAGAATGAGGAAGTGGGGGCCCCTCTCAGCCC
CCTTTTGGAGGTACCTCCCTGGACCGGGGAGGTGAACCCAGCCCAGAGAGATGGGGGTGC
CCTGGGGCGGGGCCCCTGGGACGCTTCCGATAGATCTGCCCTTCTGAAGAGCAAGCTGAG
GGCACTGCTTGCTGCCCCTCGGAGCCTGCGGAGGTCCAGCTGCTTCGGGGGTAGGATGGA
CAGGATTGGAGCACAGAGTGGACTGGGCTGTAACAGCTTCCGGTACCGAAGATAACGCCA
GGGAGGAAAAGGCGAGCCAGGCCCCGGCCAGACTTGGAGAGACCCTCATCCCCTGGGGTC
TCTCTCTCATCTTTGTCCTGTCTCGTTGCTGTCAAGTTGAGGTGTGAAGAGCACCCGATT
CAAGGGGCAGCCTCCTGTCAACATGTCTCACATTTTAGGCTAAATGTAAAGTGATTTCAT
TGCGGCTTCTCCACCTCTCCCACTCCTGCATTAAATTTTAGTCACCTGTTAACTGACATT
GGTTTCAAAACCAATAAACTTCAGCACCACGGACAGACGCTGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAAGCCAGGAGGGGGAAACCAGAAAGGAGAGGGAAGAGGAGCAAGTGGCAGACCACTC
CCTGACCGACGCCAGCATGGGCTCCTCCACCATCACCGTGAGCTTCCTCCTCGTTCTGGT
GTTTCAGTTCCCAGGGCAAACCAGAGCGAACCCTGTGTACGGCTCCGTGTCCAATGCAGA
CCTGATGGATTTCAAGAATTTGCTGGACCACTTGGAGGACAAGACGCCTTTAGAAGATGA
GGCTATGCCCCCACAAGTACTAAGCGAGCAGAATGAGGAAGTGGGGGCCCCTCTCAGCCC
CCTTTTGGAGGTACCTCCCTGGACCGGGGAGGTGAACCCAGCCCAGAGAGATGGGGGTGC
CCTGGGGCGGGGCCCCTGGGACGCTTCCGATAGATCTGCCCTTCTGAAGAGCAAGCTGAG
GGCACTGCTTGCTGCCCCTCGGAGCCTGCGGAGGTCCAGCTGCTTCGGGGGTAGGATGGA
CAGGATTGGAGCACAGAGTGGACTGGGCTGTAACAGCTTCCGGTACCGAAGATAACGCCA
GGGAGGAAAAGGCGAGCCAGGCCCCGGCCAGACTTGGAGAGACCCTCATCCCCTGGGGTC
TCTCTCTCATCTTTGTCCTGTCTCGTTGCTGTCAAGTTGAGGTGTGAAGAGCACCCGATT
CAAGGGGCAGCCTCCTGTCAACATGTCTCACATTTTAGGCTAAATGTAAAGTGATTTCAT
TGCGGCTTCTCCACCTCTCCCACTCCTGCATTAAATTTTAGTCACCTGTTAACTGACATT
GGTTTCAAAACCAATAAACTTCAGCACCACGGACAGACGCTGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ANF_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               ANF_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               233-523, + strand, RNAz p=0.999309
               

               
               241-438, - strand, RNAz p=0.990793

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               233-523, + strand, RNAz p=0.999309
               

               
               241-438, - strand, RNAz p=0.990793

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               194-523, gnl|bosTau2|chr16 (21475673-21476002)
               

               
               194-523, gnl|canFam2|chr2 (87291061-87290605)
               

               
               194-523, gnl|dasNov1|scaffold_6045 (44740-44257)
               

               
               194-523, gnl|echTel1|scaffold_323748 (51971-52460)
               

               
               194-523, gnl|hg17|chr1 (11841382-11841829)
               

               
               194-523, gnl|Hg17|chr1 (11841765-11841436)
               

               
               194-523, gnl|mm7|chr4 (146991019-146990553)
               

               
               194-523, gnl|Mm7|chr4 (146990597-146990926)
               

               
               194-523, gnl|monDom2|scaffold_175 (251565-251129)
               

               
               194-523, gnl|oryCun1|scaffold_185006 (8700-8214)
               

               
               194-523, gnl|panTro1|chr1 (12057693-12058140)
               

               
               194-523, gnl|rheMac2|chr1 (14948738-14949185)
               

               
               194-523, gnl|rn3|chr5 (165085425-165084958)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-523, gnl|bosTau2|chr16 (21475673-21476002)
               

               
               194-523, gnl|canFam2|chr2 (87291061-87290605)
               

               
               194-523, gnl|dasNov1|scaffold_6045 (44740-44257)
               

               
               194-523, gnl|echTel1|scaffold_323748 (51971-52460)
               

               
               194-523, gnl|hg17|chr1 (11841382-11841829)
               

               
               194-523, gnl|Hg17|chr1 (11841765-11841436)
               

               
               194-523, gnl|mm7|chr4 (146991019-146990553)
               

               
               194-523, gnl|Mm7|chr4 (146990597-146990926)
               

               
               194-523, gnl|monDom2|scaffold_175 (251565-251129)
               

               
               194-523, gnl|oryCun1|scaffold_185006 (8700-8214)
               

               
               194-523, gnl|panTro1|chr1 (12057693-12058140)
               

               
               194-523, gnl|rheMac2|chr1 (14948738-14949185)
               

               
               194-523, gnl|rn3|chr5 (165085425-165084958)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.557025)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.557025)

	233-523, + strand, RNAz p=0.999309
	241-438, - strand, RNAz p=0.990793

	194-523, gnl\|bosTau2\|chr16 (21475673-21476002)
	194-523, gnl\|canFam2\|chr2 (87291061-87290605)
	194-523, gnl\|dasNov1\|scaffold_6045 (44740-44257)
	194-523, gnl\|echTel1\|scaffold_323748 (51971-52460)
	194-523, gnl\|hg17\|chr1 (11841382-11841829)
	194-523, gnl\|Hg17\|chr1 (11841765-11841436)
	194-523, gnl\|mm7\|chr4 (146991019-146990553)
	194-523, gnl\|Mm7\|chr4 (146990597-146990926)
	194-523, gnl\|monDom2\|scaffold_175 (251565-251129)
	194-523, gnl\|oryCun1\|scaffold_185006 (8700-8214)
	194-523, gnl\|panTro1\|chr1 (12057693-12058140)
	194-523, gnl\|rheMac2\|chr1 (14948738-14949185)
	194-523, gnl\|rn3\|chr5 (165085425-165084958)