Non-Coding RNA Search

Ss1.1-Mixg-0009b10.5

Sequence:


               
               TGGCCTTCTAAGCAGACTGGGGAGAAGGGATTCTCTGGTTTTTCTCTCCCCTCTCCCCCC
ATTTATTAGGACTTGCCTTCTCCCTGGGCAGGGAGAGAGGCTAGGTTGGTGCTCTCCCCT
TACTCTACTCCTACTGACTTAGAACCTCTGGCTGCTGTTTGGGAGCCCAGGAAAGGGAGT
GGAGAGAATGGGCTCAAAACAAAAGAAGATAAAACAAAAAAACAGAATAAGGTGGGGAAG
GCAGATTTTCTTCTTTAAAATGGAAAATAGGAAACCCTCCAAGGATTGTGCAAGTAAAGA
CAATGTGTCGAATGCACTGACTCCCCTGGTGTAGTAGCAATAAGGAAAAATGAAATGACT
CTCCTGTGCGCACAGTCCAACCTGATTGGTGTGTCATGTTGTACTTAAAGCAGCCAACTG
GTGGGCATGTGTGACTACTCTGGGTTTCACTTTAGTTTCTAAAATTTTTATCCCTCTCAA
GTCCAGCATGGATGGGGAAATGTCCTTGGAGCCCCACAGCTGTGTACTTGTTTGCATTTG
TTTCCCCTTGAGACTTGTGTTTGTGTCCTGCTTTGAGCTGTACCTTGTCTAGTCCATTGT
AAAATTACCCCAGCAGCTGTAATGTACAGTTCCTTCTGAAGCAAGCAGCAGCAGCAGCAG
CACAATTCTGTGTTTTATAAAGACAACAGTGGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTTCTAAGCAGACTGGGGAGAAGGGATTCTCTGGTTTTTCTCTCCCCTCTCCCCCC
ATTTATTAGGACTTGCCTTCTCCCTGGGCAGGGAGAGAGGCTAGGTTGGTGCTCTCCCCT
TACTCTACTCCTACTGACTTAGAACCTCTGGCTGCTGTTTGGGAGCCCAGGAAAGGGAGT
GGAGAGAATGGGCTCAAAACAAAAGAAGATAAAACAAAAAAACAGAATAAGGTGGGGAAG
GCAGATTTTCTTCTTTAAAATGGAAAATAGGAAACCCTCCAAGGATTGTGCAAGTAAAGA
CAATGTGTCGAATGCACTGACTCCCCTGGTGTAGTAGCAATAAGGAAAAATGAAATGACT
CTCCTGTGCGCACAGTCCAACCTGATTGGTGTGTCATGTTGTACTTAAAGCAGCCAACTG
GTGGGCATGTGTGACTACTCTGGGTTTCACTTTAGTTTCTAAAATTTTTATCCCTCTCAA
GTCCAGCATGGATGGGGAAATGTCCTTGGAGCCCCACAGCTGTGTACTTGTTTGCATTTG
TTTCCCCTTGAGACTTGTGTTTGTGTCCTGCTTTGAGCTGTACCTTGTCTAGTCCATTGT
AAAATTACCCCAGCAGCTGTAATGTACAGTTCCTTCTGAAGCAAGCAGCAGCAGCAGCAG
CACAATTCTGTGTTTTATAAAGACAACAGTGGCTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-317, - strand, RNAz p=0.999987
               

               
               438-557, + strand, RNAz p=0.507093

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-317, - strand, RNAz p=0.999987
               

               
               438-557, + strand, RNAz p=0.507093

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012199, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012199, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr3 (76955120-76954443)
               

               
               1-696, gnl|Hg17|chr1 (36058304-36058983)
               

               
               1-696, gnl|Mm7|chr4 (125880325-125879669)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr3 (76955120-76954443)
               

               
               1-696, gnl|Hg17|chr1 (36058304-36058983)
               

               
               1-696, gnl|Mm7|chr4 (125880325-125879669)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               nbm (0.0993246)

	1-317, - strand, RNAz p=0.999987
	438-557, + strand, RNAz p=0.507093

	1-696, gnl\|bosTau2\|chr3 (76955120-76954443)
	1-696, gnl\|Hg17\|chr1 (36058304-36058983)
	1-696, gnl\|Mm7\|chr4 (125880325-125879669)