Non-Coding RNA Search

Ss1.1-Mixg-0009b11.3

Sequence:


               
               CAGTCTCAGACCCGTTTTGCCCAGAAGTCTTTTCCTAAGGAGAGACTACGTCAGCACGTT
TCGGCGTGAGACGGTGATATTCCTGCGCTTTAGAACAGCTCCCGGCGGGGTCTTTTTGTT
GATGTCCTATATCTCACTCGGTATTGCGTTCTAAGCTGAGCGAGCCCGCCCGAAGAGCGG
AGGAATTTAAGTGTTTGCTGCGGTGACCTCATCAGCCTGCCAGGATGGCGATGCAAGCAG
CCAAGAGGGCAAACATTCGACTTCCACCTGAAGTAAATCGGATTTTATATATAAGAAATT
TGCCCTACAAAATCACAGCTGAAGAAATGTATGATATATTTGGGAAATATGGACCTATTC
GTCAAATCAGAGTGGGGAACACACCTGAAACTAGAGGAACAGCTTATGTGGTCTATGAAG
ACATATTTGATGCCAAGAATGCATGTGATCACCTGTCAGGATTCAATGTTTGTAACAGAT
ACCTCGTGGTCTTGTACTATAATGCCAACAGGGCATTTCAGAAGATGGACACAAAGAAGA
AGGAAGAACAGTTGAAGCTTCTCAAGGAAAAATATGGCATTAACACAGATCCACCAAAGT
AAACATCTTCTGCATTTTCATTTTGGACTAAAACACATTAATGGCCATCAGCACCCTTTT
TTGTTTTTAGTTAATATTGAAAATTGTGATTTCATACTTGAGACTCAAAAAGCCTGCTTA
CAATTTTGATGTATATCAGAATATATTACATTAATAAACCTGTAGCTTTTTATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCTCAGACCCGTTTTGCCCAGAAGTCTTTTCCTAAGGAGAGACTACGTCAGCACGTT
TCGGCGTGAGACGGTGATATTCCTGCGCTTTAGAACAGCTCCCGGCGGGGTCTTTTTGTT
GATGTCCTATATCTCACTCGGTATTGCGTTCTAAGCTGAGCGAGCCCGCCCGAAGAGCGG
AGGAATTTAAGTGTTTGCTGCGGTGACCTCATCAGCCTGCCAGGATGGCGATGCAAGCAG
CCAAGAGGGCAAACATTCGACTTCCACCTGAAGTAAATCGGATTTTATATATAAGAAATT
TGCCCTACAAAATCACAGCTGAAGAAATGTATGATATATTTGGGAAATATGGACCTATTC
GTCAAATCAGAGTGGGGAACACACCTGAAACTAGAGGAACAGCTTATGTGGTCTATGAAG
ACATATTTGATGCCAAGAATGCATGTGATCACCTGTCAGGATTCAATGTTTGTAACAGAT
ACCTCGTGGTCTTGTACTATAATGCCAACAGGGCATTTCAGAAGATGGACACAAAGAAGA
AGGAAGAACAGTTGAAGCTTCTCAAGGAAAAATATGGCATTAACACAGATCCACCAAAGT
AAACATCTTCTGCATTTTCATTTTGGACTAAAACACATTAATGGCCATCAGCACCCTTTT
TTGTTTTTAGTTAATATTGAAAATTGTGATTTCATACTTGAGACTCAAAAAGCCTGCTTA
CAATTTTGATGTATATCAGAATATATTACATTAATAAACCTGTAGCTTTTTATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6IQM0_BRARE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6IQM0_BRARE

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               4-254, gnl|bosTau2|chr11 (56321843-56322093)
               

               
               4-254, gnl|Hg17|chr2 (24210959-24210721)
               

               
               4-254, gnl|Mm7|chr12 (4750097-4750328)
               


               
               255-392, gnl|bosTau2|chr11 (56324797-56324933)
               

               
               255-392, gnl|Hg17|chr2 (24208715-24208583)
               

               
               255-392, gnl|Mm7|chr12 (4753103-4753239)
               


               
               468-777, gnl|bosTau2|chr11 (56329662-56329959)
               

               
               468-777, gnl|Hg17|chr2 (24202409-24202107)
               

               
               468-777, gnl|Mm7|chr12 (4766911-4767197)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-254, gnl|bosTau2|chr11 (56321843-56322093)
               

               
               4-254, gnl|Hg17|chr2 (24210959-24210721)
               

               
               4-254, gnl|Mm7|chr12 (4750097-4750328)
               


               
               255-392, gnl|bosTau2|chr11 (56324797-56324933)
               

               
               255-392, gnl|Hg17|chr2 (24208715-24208583)
               

               
               255-392, gnl|Mm7|chr12 (4753103-4753239)
               


               
               468-777, gnl|bosTau2|chr11 (56329662-56329959)
               

               
               468-777, gnl|Hg17|chr2 (24202409-24202107)
               

               
               468-777, gnl|Mm7|chr12 (4766911-4767197)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

Help | Less info


               
               lin (1.31043)
               

               
               aor (1.17165)
               

               
               thg (1.14112)
               

               
               fco (1.10046)
               

               
               ret (1.02987)
               

               
               cbe (0.956938)
               

               
               rec (0.865351)
               

               
               pgl (0.829384)
               

               
               sug (0.763747)
               

               
               cki (0.660939)
               

               
               sme (0.610874)
               

               
               spc (0.566829)
               

               
               duo (0.518403)
               

               
               cut (0.509771)
               

               
               bla (0.497389)
               

               
               cje (0.495704)
               

               
               mga (0.480615)
               

               
               bfe (0.449573)
               

               
               ski (0.440205)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               nmm (0.398406)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               tbr (0.308356)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.31043)
               

               
               aor (1.17165)
               

               
               thg (1.14112)
               

               
               fco (1.10046)
               

               
               ret (1.02987)
               

               
               cbe (0.956938)
               

               
               rec (0.865351)
               

               
               pgl (0.829384)
               

               
               sug (0.763747)
               

               
               cki (0.660939)
               

               
               sme (0.610874)
               

               
               spc (0.566829)
               

               
               duo (0.518403)
               

               
               cut (0.509771)
               

               
               bla (0.497389)
               

               
               cje (0.495704)
               

               
               mga (0.480615)
               

               
               bfe (0.449573)
               

               
               ski (0.440205)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               nmm (0.398406)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               tbr (0.308356)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	4-254, gnl\|bosTau2\|chr11 (56321843-56322093)
	4-254, gnl\|Hg17\|chr2 (24210959-24210721)
	4-254, gnl\|Mm7\|chr12 (4750097-4750328)

	255-392, gnl\|bosTau2\|chr11 (56324797-56324933)
	255-392, gnl\|Hg17\|chr2 (24208715-24208583)
	255-392, gnl\|Mm7\|chr12 (4753103-4753239)

	468-777, gnl\|bosTau2\|chr11 (56329662-56329959)
	468-777, gnl\|Hg17\|chr2 (24202409-24202107)
	468-777, gnl\|Mm7\|chr12 (4766911-4767197)

	lin (1.31043)
	aor (1.17165)
	thg (1.14112)
	fco (1.10046)
	ret (1.02987)
	cbe (0.956938)
	rec (0.865351)
	pgl (0.829384)
	sug (0.763747)
	cki (0.660939)
	sme (0.610874)
	spc (0.566829)
	duo (0.518403)
	cut (0.509771)
	bla (0.497389)
	cje (0.495704)
	mga (0.480615)
	bfe (0.449573)
	ski (0.440205)
	nms (0.427716)
	hea (0.408998)
	ste (0.405625)
	nmm (0.398406)
	ova (0.387397)
	cmu (0.372787)
	tra (0.369276)
	sag (0.36543)
	sto (0.359648)
	gul (0.355177)
	fbs (0.350693)
	vin (0.332557)
	nje (0.33184)
	tbr (0.308356)
	csk (0.281492)
	nca (0.273748)
	pla (0.267344)
	ece (0.229305)
	tes (0.207814)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	nco (0.161734)
	eli (0.151814)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	lyg (0.133103)
	kid (0.129735)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)