Non-Coding RNA Search

Ss1.1-Mixg-0009d10.3

Sequence:


               
               GGTGCTGACTCTTGCCACTTGGCACTCCCCGCTCGTCCTGGGGTGCCGTCCAGGCAGGAT
CGCGTGGTCAGGCTGTGCGGTGGTAGGAATGAGAAACAGGATGAGAGATTGGAGGGCAGG
GTTTGACTGAGACCCAGAGCTCCTGACTCCCCTGATGGGTTGGAGGCCCTGTGCCATGGC
TTCACTGAGGACAGCCCAGCTGGGGACCCCCAGCTCAGAGCCTGTGCTCACAGGCCAGCG
GGATCCCCTTTTCCCTCCCTGCTGCTCCGCTCTGCCTCCCCTTTGCTTCCAAGCCCTTCC
TTGGAGAAGGGCACCCCTGCACTTTGACCTTGCTGAGTTGGGGCTCCCTTCTCTCATCAG
GCACAAGAGAGGGCTGAGGAAAACTGGGTTCCACACAAGTGAAGAGCTGCAAGGACCCTT
AGGGGCAACAGAACCTGGGCCGGGAGACAGTGACCTGTCCAAAGTCAAGCCCAGAGCTAG
GGGTTCCTGATCCAGGTGTCCTGCTTCTGACGTGACACTGACCCTGCACCGTTACAGGAC
ACCTGCCCGTGTATGGCTCCTAGTCCACCTGGGGGGGGGGGGCGTAACAATTGAGGGACT
AATTCCCAGTGTACTGGCATCTGCTCCCCACTGCAACCTTCCCTGGTGATTCTTGATCTT
CAAAGACTATTGGGGGTCCCGGGCTTCCCCTATATAACCAAGAGCCCCCACACTACACCT
CAGGGGCCCCTAAGCTTGGCCCAAGACCCCTTTGATTCTCTAAGGAGCACAGAGGGGGAG
CACCTCTCCCCAGAGTTTATGGGAGGATGGACTTGTCCATCTGTCTCCTGGCGCTGCCCC
TTGATGTGACACTCCCATCCCCTGGTGCCCACAGCCCTGGTCTGGGTGGCCCGGCCCTTC
CCGCAGCGTTACTGCCTGTGTATAGTATAAATATATATATTTTCTACATATAAGATGTAT
AATATAAGGCTCCACAAATATATCTCTGTGTGTGCGTGTGTGCAGTGAATGGCGGTCCCC
ATCCTGGGCCCCCACTCTGGACTCCCCCCACCACCTGGTTAAGTCTCTCAAGAGTGAATC
CAGTGGCCCTGTGGCACCCTTCTTTATGACATCCGTCCATTTGTGGTGAACCAAGTGAAG
GTGGTGACTTCTGGTGACATAGTAATAAAGTGAAGACTCAATCCCACCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCTGACTCTTGCCACTTGGCACTCCCCGCTCGTCCTGGGGTGCCGTCCAGGCAGGAT
CGCGTGGTCAGGCTGTGCGGTGGTAGGAATGAGAAACAGGATGAGAGATTGGAGGGCAGG
GTTTGACTGAGACCCAGAGCTCCTGACTCCCCTGATGGGTTGGAGGCCCTGTGCCATGGC
TTCACTGAGGACAGCCCAGCTGGGGACCCCCAGCTCAGAGCCTGTGCTCACAGGCCAGCG
GGATCCCCTTTTCCCTCCCTGCTGCTCCGCTCTGCCTCCCCTTTGCTTCCAAGCCCTTCC
TTGGAGAAGGGCACCCCTGCACTTTGACCTTGCTGAGTTGGGGCTCCCTTCTCTCATCAG
GCACAAGAGAGGGCTGAGGAAAACTGGGTTCCACACAAGTGAAGAGCTGCAAGGACCCTT
AGGGGCAACAGAACCTGGGCCGGGAGACAGTGACCTGTCCAAAGTCAAGCCCAGAGCTAG
GGGTTCCTGATCCAGGTGTCCTGCTTCTGACGTGACACTGACCCTGCACCGTTACAGGAC
ACCTGCCCGTGTATGGCTCCTAGTCCACCTGGGGGGGGGGGGCGTAACAATTGAGGGACT
AATTCCCAGTGTACTGGCATCTGCTCCCCACTGCAACCTTCCCTGGTGATTCTTGATCTT
CAAAGACTATTGGGGGTCCCGGGCTTCCCCTATATAACCAAGAGCCCCCACACTACACCT
CAGGGGCCCCTAAGCTTGGCCCAAGACCCCTTTGATTCTCTAAGGAGCACAGAGGGGGAG
CACCTCTCCCCAGAGTTTATGGGAGGATGGACTTGTCCATCTGTCTCCTGGCGCTGCCCC
TTGATGTGACACTCCCATCCCCTGGTGCCCACAGCCCTGGTCTGGGTGGCCCGGCCCTTC
CCGCAGCGTTACTGCCTGTGTATAGTATAAATATATATATTTTCTACATATAAGATGTAT
AATATAAGGCTCCACAAATATATCTCTGTGTGTGCGTGTGTGCAGTGAATGGCGGTCCCC
ATCCTGGGCCCCCACTCTGGACTCCCCCCACCACCTGGTTAAGTCTCTCAAGAGTGAATC
CAGTGGCCCTGTGGCACCCTTCTTTATGACATCCGTCCATTTGTGGTGAACCAAGTGAAG
GTGGTGACTTCTGGTGACATAGTAATAAAGTGAAGACTCAATCCCACCAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-91, - strand, RNAz p=0.756264
               

               
               200-396, - strand, RNAz p=0.975748
               

               
               710-825, - strand, RNAz p=0.842476
               

               
               905-1014, + strand, RNAz p=0.930422

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-91, - strand, RNAz p=0.756264
               

               
               200-396, - strand, RNAz p=0.975748
               

               
               710-825, - strand, RNAz p=0.842476
               

               
               905-1014, + strand, RNAz p=0.930422

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               213-442, - strand, RNAmicro p=0.997566

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               213-442, - strand, RNAmicro p=0.997566

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004711, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004711, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1189, gnl|bosTau2|chr5 (69784680-69785867)
               

               
               1-1189, gnl|Hg17|chr22 (38104890-38106083)
               

               
               1-1189, gnl|Mm7|chr15 (80202903-80203982)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1189, gnl|bosTau2|chr5 (69784680-69785867)
               

               
               1-1189, gnl|Hg17|chr22 (38104890-38106083)
               

               
               1-1189, gnl|Mm7|chr15 (80202903-80203982)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

	1-91, - strand, RNAz p=0.756264
	200-396, - strand, RNAz p=0.975748
	710-825, - strand, RNAz p=0.842476
	905-1014, + strand, RNAz p=0.930422

	1-1189, gnl\|bosTau2\|chr5 (69784680-69785867)
	1-1189, gnl\|Hg17\|chr22 (38104890-38106083)
	1-1189, gnl\|Mm7\|chr15 (80202903-80203982)

	fcc (0.39557)
	fbs (0.350693)
	hyp (0.285673)
	fce (0.271592)
	pgl (0.236967)
	ece (0.229305)
	cki (0.165235)
	pty (0.142714)
	cov (0.132153)
	ebs (0.118301)