Ss1.1-Mixg-0009h03.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGGGTCTGCATTTATTGGCTTTCCCCA ACTTCCAGGCCTTGAGCTGCCACATGGCTGGGTTTGGCTCCCGGCAGCCGGCTGGGCCCG AGCTCTGTCCGGCTAGGACTAGCAGAGCTGGCTGAGCCTCAGCAGCAGTGCGAGGCAGGC ATAAAGTGCACACGTGCAGCTCTGGGCCTCTGGCTCCCAGCACACCTGAGCGGTGCCCAC CTGTGGCTCTAGGCCACACTCCTCCAGCAGGGCCCAGATGGGTGCCTCTGAGCCCCAGCT GCTCCCCAGCAGCGTGGGTGGCAGGGACACGGCCCTGCGCTCCTGCCATGGGGCACTCTG TTCCAGAAGACTCCCCACCAGCGTGAGCGCGCCGGACAGGGCCCCCGTCTCCAGCACCTT CGCCAGCAGCACATGCTGGGTTTCATTCAGCACAGCTAGAGCCTGTACCAGGTAGAAGAT GGGGCCGGCGACTTCCCTCTCCAGCCTTCTGCAGGCCAGCACCAGGCACTCGAGCATGGC ACCCGCTGGACCGTCCTGAGGCTCCACCAGCCCACCGCACAGGCCCTGCTCCAGCGAGTC CTCCAGGGCTTGCAGGGCGGGCTCGTCCTGCAGCACTTGCCCCAGGCCCCCCAGCAGCTG CCTACATGGCTCCCTGGACAAGGCCTCCAGGCCCGCGGCCCAGGCGTCCACCTCGGCCTG CAGGCCCTGGAAGTCTTCGGTGGTCACCAGCTGGTCCTCCGCGGGCCCGTCTGACTGGAA CTTCAGGTGCTCAGAGGGGAAGCTCATCCCGGAGACGAGGCGGGAGAACTGCGGCGGCTG CCCATCTGCACCGTGGGAGGCGCTATGGCCTTCCCGCAGCGGCCTGAAGGTTCGCTGCTT CTTGTCCGGGAAGAGAAGGATGTCCCAGTCAGAACCAATCACCAGCTGGGCCACCCGAAA TGCAATGACGCTGCCCGAGGGGATGGTGACCGTCTTCTTCCGGCTCAGGTGGCCCTGGCC CTGGCCCTGCAAGGACACAGCTCCAGGAAGGGCAAACTGGCCCGAGCCCTCCTGCTTGTG GGTCCGCGTGACCTCCACCTCCTTCTGCGTCTGGAGCACCTCCGTCACCACGAACACATC GTTCCCGCGACTCCGCAGCTGCTGCAGGACTTTGTGCTCAGGCTGCCGCAGGCGCCTTTC AAGGTGCATGGCGTCCCAGGTGTTGGGGGCCACTCGTAGCGTGCACACGTTCATCGAGGC GCTGGAGCTGCCAGACACCGCGGCCCCGCCGGAGAACTTCCCCTGTCCTGGGGCTGCCAG CTCCACCTGGCCTTGCAGCTGCCCGTCCATAGTGTCATGGAAGTAGAAGGGGCCGCCACG CTCCACAGCTGGCTCCGGGGCACTGGGCTCCAGGATGTCCCAGATGGACAGGTCAACACA TGTGTAGCGGGGTCTCCAGAACCATGAACTCGAGGGCTTCCTGCCCAGAAGGCAGTAGGG CTGGAAGCGGTCAGAGGTCTGCAGGCTCTTGACAGGGGTCAGTTCCCTGCCGTGGTCCAG CTCCCGGACCACGCTCTTGACCACCCTCTCAAAGGCTGATGCCATGCTCCCGAGGGCAAG GGGCCAGGCCCTGCGCTCACAGGGACTTGGCTGTCTCCAGTGATGGGGAGCTCTTCCCCT TCAAAGCGATCCTGCGTGGCCAGGCCTCGACCGTGCGTGCCCGCGCCCCGGAGCCGCAAC CAGGAGCTCGGAGCTGCCCAGGGACCGACCGCCAGAAGGCTCCCAGCCCCAAAAGTGAAA GCGGGCCTCGGGCAGCTCCACGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGGGTCTGCATTTATTGGCTTTCCCCA ACTTCCAGGCCTTGAGCTGCCACATGGCTGGGTTTGGCTCCCGGCAGCCGGCTGGGCCCG AGCTCTGTCCGGCTAGGACTAGCAGAGCTGGCTGAGCCTCAGCAGCAGTGCGAGGCAGGC ATAAAGTGCACACGTGCAGCTCTGGGCCTCTGGCTCCCAGCACACCTGAGCGGTGCCCAC CTGTGGCTCTAGGCCACACTCCTCCAGCAGGGCCCAGATGGGTGCCTCTGAGCCCCAGCT GCTCCCCAGCAGCGTGGGTGGCAGGGACACGGCCCTGCGCTCCTGCCATGGGGCACTCTG TTCCAGAAGACTCCCCACCAGCGTGAGCGCGCCGGACAGGGCCCCCGTCTCCAGCACCTT CGCCAGCAGCACATGCTGGGTTTCATTCAGCACAGCTAGAGCCTGTACCAGGTAGAAGAT GGGGCCGGCGACTTCCCTCTCCAGCCTTCTGCAGGCCAGCACCAGGCACTCGAGCATGGC ACCCGCTGGACCGTCCTGAGGCTCCACCAGCCCACCGCACAGGCCCTGCTCCAGCGAGTC CTCCAGGGCTTGCAGGGCGGGCTCGTCCTGCAGCACTTGCCCCAGGCCCCCCAGCAGCTG CCTACATGGCTCCCTGGACAAGGCCTCCAGGCCCGCGGCCCAGGCGTCCACCTCGGCCTG CAGGCCCTGGAAGTCTTCGGTGGTCACCAGCTGGTCCTCCGCGGGCCCGTCTGACTGGAA CTTCAGGTGCTCAGAGGGGAAGCTCATCCCGGAGACGAGGCGGGAGAACTGCGGCGGCTG CCCATCTGCACCGTGGGAGGCGCTATGGCCTTCCCGCAGCGGCCTGAAGGTTCGCTGCTT CTTGTCCGGGAAGAGAAGGATGTCCCAGTCAGAACCAATCACCAGCTGGGCCACCCGAAA TGCAATGACGCTGCCCGAGGGGATGGTGACCGTCTTCTTCCGGCTCAGGTGGCCCTGGCC CTGGCCCTGCAAGGACACAGCTCCAGGAAGGGCAAACTGGCCCGAGCCCTCCTGCTTGTG GGTCCGCGTGACCTCCACCTCCTTCTGCGTCTGGAGCACCTCCGTCACCACGAACACATC GTTCCCGCGACTCCGCAGCTGCTGCAGGACTTTGTGCTCAGGCTGCCGCAGGCGCCTTTC AAGGTGCATGGCGTCCCAGGTGTTGGGGGCCACTCGTAGCGTGCACACGTTCATCGAGGC GCTGGAGCTGCCAGACACCGCGGCCCCGCCGGAGAACTTCCCCTGTCCTGGGGCTGCCAG CTCCACCTGGCCTTGCAGCTGCCCGTCCATAGTGTCATGGAAGTAGAAGGGGCCGCCACG CTCCACAGCTGGCTCCGGGGCACTGGGCTCCAGGATGTCCCAGATGGACAGGTCAACACA TGTGTAGCGGGGTCTCCAGAACCATGAACTCGAGGGCTTCCTGCCCAGAAGGCAGTAGGG CTGGAAGCGGTCAGAGGTCTGCAGGCTCTTGACAGGGGTCAGTTCCCTGCCGTGGTCCAG CTCCCGGACCACGCTCTTGACCACCCTCTCAAAGGCTGATGCCATGCTCCCGAGGGCAAG GGGCCAGGCCCTGCGCTCACAGGGACTTGGCTGTCTCCAGTGATGGGGAGCTCTTCCCCT TCAAAGCGATCCTGCGTGGCCAGGCCTCGACCGTGCGTGCCCGCGCCCCGGAGCCGCAAC CAGGAGCTCGGAGCTGCCCAGGGACCGACCGCCAGAAGGCTCCCAGCCCCAAAAGTGAAA GCGGGCCTCGGGCAGCTCCACGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 599-718, - strand, RNAz p=0.764059 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 599-718, - strand, RNAz p=0.764059 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_024736, - |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 18-379, gnl|bosTau2|chr14 (616473-616095) | |
| 18-379, gnl|Hg17|chr8 (144716378-144715974) | |
| 18-379, gnl|Mm7|chr15 (75949956-75949544) | |
| 562-772, gnl|bosTau2|chr14 (615258-615045) | |
| 562-772, gnl|Hg17|chr8 (144715457-144715270) | |
| 562-772, gnl|Mm7|chr15 (75949037-75948842) | |
| 1011-1197, gnl|bosTau2|chr14 (613804-613619) | |
| 1011-1197, gnl|canFam2|chr13 (40254731-40254894) | |
| 1011-1197, gnl|dasNov1|scaffold_47442 (1484-1326) | |
| 1011-1197, gnl|echTel1|scaffold_220050 (3738-3573) | |
| 1011-1197, gnl|hg17|chr8 (144713904-144714067) | |
| 1011-1197, gnl|Hg17|chr8 (144714115-144713914) | |
| 1011-1197, gnl|mm7|chr15 (75947495-75947648) | |
| 1011-1197, gnl|Mm7|chr15 (75947700-75947495) | |
| 1011-1197, gnl|oryCun1|scaffold_210513 (80140-79987) | |
| 1011-1197, gnl|panTro1|chr7 (147979762-147979925) | |
| 1011-1197, gnl|rheMac2|chr8 (146190975-146191139) | |
| 1011-1197, gnl|rn3|chr7 (113868835-113868988) | |
| 1389-1644, gnl|bosTau2|chr14 (612680-612425) | |
| 1389-1644, gnl|canFam2|chr13 (40253768-40254069) | |
| 1389-1644, gnl|dasNov1|scaffold_47442 (2702-2393) | |
| 1389-1644, gnl|echTel1|scaffold_220050 (4990-4678) | |
| 1389-1644, gnl|hg17|chr8 (144712598-144712930) | |
| 1389-1644, gnl|Hg17|chr8 (144712865-144712606) | |
| 1389-1644, gnl|loxAfr1|scaffold_79043 (699-1030) | |
| 1389-1644, gnl|mm7|chr15 (75945938-75946232) | |
| 1389-1644, gnl|Mm7|chr15 (75946176-75945922) | |
| 1389-1644, gnl|monDom2|scaffold_79 (4978881-4978531) | |
| 1389-1644, gnl|oryCun1|scaffold_210513 (83768-83444) | |
| 1389-1644, gnl|panTro1|chr7 (147978431-147978763) | |
| 1389-1644, gnl|rheMac2|chr8 (146189185-146189501) | |
| 1389-1644, gnl|rn3|chr7 (113867665-113867915) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-379, gnl|bosTau2|chr14 (616473-616095) | |
| 18-379, gnl|Hg17|chr8 (144716378-144715974) | |
| 18-379, gnl|Mm7|chr15 (75949956-75949544) | |
| 562-772, gnl|bosTau2|chr14 (615258-615045) | |
| 562-772, gnl|Hg17|chr8 (144715457-144715270) | |
| 562-772, gnl|Mm7|chr15 (75949037-75948842) | |
| 1011-1197, gnl|bosTau2|chr14 (613804-613619) | |
| 1011-1197, gnl|canFam2|chr13 (40254731-40254894) | |
| 1011-1197, gnl|dasNov1|scaffold_47442 (1484-1326) | |
| 1011-1197, gnl|echTel1|scaffold_220050 (3738-3573) | |
| 1011-1197, gnl|hg17|chr8 (144713904-144714067) | |
| 1011-1197, gnl|Hg17|chr8 (144714115-144713914) | |
| 1011-1197, gnl|mm7|chr15 (75947495-75947648) | |
| 1011-1197, gnl|Mm7|chr15 (75947700-75947495) | |
| 1011-1197, gnl|oryCun1|scaffold_210513 (80140-79987) | |
| 1011-1197, gnl|panTro1|chr7 (147979762-147979925) | |
| 1011-1197, gnl|rheMac2|chr8 (146190975-146191139) | |
| 1011-1197, gnl|rn3|chr7 (113868835-113868988) | |
| 1389-1644, gnl|bosTau2|chr14 (612680-612425) | |
| 1389-1644, gnl|canFam2|chr13 (40253768-40254069) | |
| 1389-1644, gnl|dasNov1|scaffold_47442 (2702-2393) | |
| 1389-1644, gnl|echTel1|scaffold_220050 (4990-4678) | |
| 1389-1644, gnl|hg17|chr8 (144712598-144712930) | |
| 1389-1644, gnl|Hg17|chr8 (144712865-144712606) | |
| 1389-1644, gnl|loxAfr1|scaffold_79043 (699-1030) | |
| 1389-1644, gnl|mm7|chr15 (75945938-75946232) | |
| 1389-1644, gnl|Mm7|chr15 (75946176-75945922) | |
| 1389-1644, gnl|monDom2|scaffold_79 (4978881-4978531) | |
| 1389-1644, gnl|oryCun1|scaffold_210513 (83768-83444) | |
| 1389-1644, gnl|panTro1|chr7 (147978431-147978763) | |
| 1389-1644, gnl|rheMac2|chr8 (146189185-146189501) | |
| 1389-1644, gnl|rn3|chr7 (113867665-113867915) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| jej (0.296765) | |
| lnt (0.284616) | |
| eje (0.197668) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| pla (0.133672) | |
| ute (0.132784) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.296765) | |
| lnt (0.284616) | |
| eje (0.197668) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| pla (0.133672) | |
| ute (0.132784) |