Non-Coding RNA Search

Ss1.1-Mixg-0010a02.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTCCAGTAACTTAATTTATTTTTGTTACAAAACAAGAACTAAGA
ACAAGTCTCAGTACAATAAATTATCCATCCCCACCCCTCCTGCCGAAGAAAGAAAAAGAG
GCTCAGAGACTCTTAGGTACAGCTCTTCCTTTGGAGGGTCCCCTTTAACATCTGAATGGG
GGGGTACAGCTTCCCTAAGGGCCTGTACAGGAAACTTTCTGGGTTTTGGAGTGCCCTGCA
CTCTGCCCCTTCCCTAAGAAAAACCTCTCTGTCTCCCATTGCTCCCACTACTCTGCAGCC
CAGGCTGCAGGAGAGGAGTTTGAAGATAGCAAATCGGAGTGAGTAGTCTCTGTCTGGATA
CAGGTCTTATGGCTCCACATGAAGCCTGGGGGCTATTTTCCTCAAAGGAAAAGAGTGGTC
AAACTCTAGGGACCCCCCCCCAGCCAAAAGGAATATGAAGCAGAGTTAAAGGGACTCCAG
GGTTGGGTAGAGAGGGGCCTTACGGTTCAGTTCAGCTTAGTCCATTCAGGTGTGTTAAGG
AGCAGAAGAGAGTGACAGCTCCCCTCCAGGTCCTCCTTATTGTCGGGGAGAGGACACAGA
CTCCCCCTGACCCCCACCATCTCCAAAGCTGTTTCCAGGTCAGGTCAACACTTTGAGCTT
CCAGAGGCCAAGATTGACCCGTGGACAGAAGTCAGAGCGAAAGGCTGCAAAGGTGCCCCT
CCCTTTCCCCAGCCCTACCGCGGGGCTGACCTCACTTACACACATTGACCCACTCTGTGA
CCTTGCACTCATCACACAGCACGTAGCAGCACCAGTGGAAGCGGCAATGACAGCGCTNCA
CTCGTGTCTGCCGCAGCACGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTCCAGTAACTTAATTTATTTTTGTTACAAAACAAGAACTAAGA
ACAAGTCTCAGTACAATAAATTATCCATCCCCACCCCTCCTGCCGAAGAAAGAAAAAGAG
GCTCAGAGACTCTTAGGTACAGCTCTTCCTTTGGAGGGTCCCCTTTAACATCTGAATGGG
GGGGTACAGCTTCCCTAAGGGCCTGTACAGGAAACTTTCTGGGTTTTGGAGTGCCCTGCA
CTCTGCCCCTTCCCTAAGAAAAACCTCTCTGTCTCCCATTGCTCCCACTACTCTGCAGCC
CAGGCTGCAGGAGAGGAGTTTGAAGATAGCAAATCGGAGTGAGTAGTCTCTGTCTGGATA
CAGGTCTTATGGCTCCACATGAAGCCTGGGGGCTATTTTCCTCAAAGGAAAAGAGTGGTC
AAACTCTAGGGACCCCCCCCCAGCCAAAAGGAATATGAAGCAGAGTTAAAGGGACTCCAG
GGTTGGGTAGAGAGGGGCCTTACGGTTCAGTTCAGCTTAGTCCATTCAGGTGTGTTAAGG
AGCAGAAGAGAGTGACAGCTCCCCTCCAGGTCCTCCTTATTGTCGGGGAGAGGACACAGA
CTCCCCCTGACCCCCACCATCTCCAAAGCTGTTTCCAGGTCAGGTCAACACTTTGAGCTT
CCAGAGGCCAAGATTGACCCGTGGACAGAAGTCAGAGCGAAAGGCTGCAAAGGTGCCCCT
CCCTTTCCCCAGCCCTACCGCGGGGCTGACCTCACTTACACACATTGACCCACTCTGTGA
CCTTGCACTCATCACACAGCACGTAGCAGCACCAGTGGAAGCGGCAATGACAGCGCTNCA
CTCGTGTCTGCCGCAGCACGTTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               168-277, - strand, RNAz p=0.548767
               

               
               585-696, - strand, RNAz p=0.86107

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-277, - strand, RNAz p=0.548767
               

               
               585-696, - strand, RNAz p=0.86107

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_003394, -
               

               
               5' of NM_003394, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003394, -
               

               
               5' of NM_003394, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-864, gnl|bosTau2|chr5 (22486040-22485202)
               

               
               17-864, gnl|Hg17|chr12 (47645389-47646257)
               

               
               17-864, gnl|Mm7|chr15 (98757398-98758235)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-864, gnl|bosTau2|chr5 (22486040-22485202)
               

               
               17-864, gnl|Hg17|chr12 (47645389-47646257)
               

               
               17-864, gnl|Mm7|chr15 (98757398-98758235)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	168-277, - strand, RNAz p=0.548767
	585-696, - strand, RNAz p=0.86107

	17-864, gnl\|bosTau2\|chr5 (22486040-22485202)
	17-864, gnl\|Hg17\|chr12 (47645389-47646257)
	17-864, gnl\|Mm7\|chr15 (98757398-98758235)