Non-Coding RNA Search

Ss1.1-Mixg-0010c10.5

Sequence:


               
               GACATTTAATATGTTGTTACAGAAATAACTGAAGTTTTCCTAAGAAGAAGGCAAGAAAAG
AATAGGAGAAAGTAATAGCCAAAGTGGTAGATTCCTGGAGGCCCTCCAAAAAAACTCAGT
GAGGGGGCTCTAAGCAGACGAAATAGAGCAAAACGGGTTTCTAATATTCCCCAGAGACTG
GGACTTGAGACATTAGGTAGGAATAGTACTTATCTTGAACATTGAACTTGGGCTCTTCAA
AGTAATCAACCACGAGACATGGGAGCGTGTTTTTGGAACAGTTCACAAGGCAGACCTGCA
CACTTGTTGAGGTCTTATCAGGAGTGTCAGCTTTGTTAGGTAGTAACAGGGATCAAGGCA
TGGCAGGTGTGGATTCACCCCCAGAATGTCTTCATGGACCATTCTTTGTACACAGAGGTG
GTTCTACTGCTCACCAGCGGATTGTGCTAGTCTTGGGACCTCTTTCTGCTTCCTTTCAGA
GACCCTTTGTGACGGAGGTAGGCAGTTTGTGAGATGGTTGGCTAGAATTAGCAGTGTCTA
AGTTACGTGGCCTTGGATCAGTTGGTTCCTTGCTGTCTGTGCATGGTGCATGCCGAGTCA
GAAAGCCTAGAAACCATCAGCATTAAAGTCTAGGTGCAGAGGAATCCTTGCTAGAGCCAT
TAATGAATCAAGAAAGGTTTTACCTATCGTCATGGTGAAATAGTCCAGGAGTACCTTTAG
AGATTGTCAGACTGTGCGCTGTGAGCTTCCCTTAGTCCTCAGAAGGCTTACAGAAACCTA
GGCACACTGCTTCTACCCTTTGAGCTAAAAAAACAGAAACCTAACTTGATGCATCGGTAC
TATTTCCATAGAGCTGACATGGGCAAAATCATGAAATAGAATCTGTTCCATAAATTATTT
CTTTAAATTTTCTCTTAATTTTGCCTTTAGGAAAAAATTAAAATTGTTCAAAGACAGTTT
GCTGTCACTGGTGCTGCCCCAAAGCTTTCCAATCCTCTAGGAATTTTTATGAATTAAATG
GTTGCTATGGGAAGGTCAAGATTCATCCAAGAGTATCATGGTATAAATTTAATGGTTTGC
AACTGTTTTAATTTTTCTTTGCCTGTGCCAGTTATACAATGCAGTCAACCCCCTTTTCAG
TAGCTTCTGTTCATTAGCCTGTGTTTTTCCAGGCAGTAACTCCCAAAAGGCTTTTCTTAG
TGATTGTAAAGAAAGAAAATCGCATCTAGGCCTGTGCTGCAAAGCTGGGTGGTCTGTCTT
TACTTTCTAGCAAATTGAGTTGATGGATTTAAGATAAGCCTTTGGGGTTCCTGTCACAGT
TTCCTGGGCTCTGAGAAAGGGTTGGGCCTCCTTTACTCTCAGGGTTTTGAGTATTTTTCT
AATGTTTGTAAGTTCTCTTTTACTCCTCTAATAAAAATGAAAGCTCTCTGCCAAAAAAAA
AAAAAAGTCTTTGATTGGTTTGGAGATCTAGGAGAAAAAAATAAGTATACCTGAGACCTT
CAGTTGGTCTTTTATTTATTTCAAATAAAAAGTAGTTTGATAAGCTACCAGAGTTAGTGC
TTTTTTAAAAACATTCTCTGAAGAGATAGGAACTCTCCCTCAGGAAACCTATAAAAGCTA
TTCCCAATACATTGCAATTGCTTTAGATTTTTAGTCCTTTGGAGCAAACGTCTGATGTTA
TGTCTGATGTTATGTCTGATGTTATGTTTTTAGAGCTGTGGGGAAGAAAATGTTTAAAAA
AATTAAGGGGTGTTATTGAAACAGTGATTTTCTGGCTGAATTATGTGCGAGCAAAGTTTT
AGGGCAGCTGTCCAGTTCTCGGTCTGTTTTCCTGACAGTAAAGCAGATAGTAAGCAGTGT
CTTGACAAGTGATTTGCTTATTCCATACTGACATCTAAAGGCATTAGCCTTCTGTTTGAC
AACCCTGGGGATACCCCTCTGCACCGTGACTTATTAATGTTTTTTTAGACAAGGCTAAAC
CAGGATGACTCTATGTATTTGTAGTTTCACTCTTCACATACCAGCTGCTAAAAGAAAAAC
CATGACTTTAATCTTGTCTTGAAATGACTCCTGATTGTTAAATTCATCCAAACCCTTCCT
CTTCAGGGAGGGTTGCTGCTAGTAACATCAGTTTTCAATGTTCTGCTTTAGATATGTGTC
CTATGGGAGTCTGGAAACTGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATTTAATATGTTGTTACAGAAATAACTGAAGTTTTCCTAAGAAGAAGGCAAGAAAAG
AATAGGAGAAAGTAATAGCCAAAGTGGTAGATTCCTGGAGGCCCTCCAAAAAAACTCAGT
GAGGGGGCTCTAAGCAGACGAAATAGAGCAAAACGGGTTTCTAATATTCCCCAGAGACTG
GGACTTGAGACATTAGGTAGGAATAGTACTTATCTTGAACATTGAACTTGGGCTCTTCAA
AGTAATCAACCACGAGACATGGGAGCGTGTTTTTGGAACAGTTCACAAGGCAGACCTGCA
CACTTGTTGAGGTCTTATCAGGAGTGTCAGCTTTGTTAGGTAGTAACAGGGATCAAGGCA
TGGCAGGTGTGGATTCACCCCCAGAATGTCTTCATGGACCATTCTTTGTACACAGAGGTG
GTTCTACTGCTCACCAGCGGATTGTGCTAGTCTTGGGACCTCTTTCTGCTTCCTTTCAGA
GACCCTTTGTGACGGAGGTAGGCAGTTTGTGAGATGGTTGGCTAGAATTAGCAGTGTCTA
AGTTACGTGGCCTTGGATCAGTTGGTTCCTTGCTGTCTGTGCATGGTGCATGCCGAGTCA
GAAAGCCTAGAAACCATCAGCATTAAAGTCTAGGTGCAGAGGAATCCTTGCTAGAGCCAT
TAATGAATCAAGAAAGGTTTTACCTATCGTCATGGTGAAATAGTCCAGGAGTACCTTTAG
AGATTGTCAGACTGTGCGCTGTGAGCTTCCCTTAGTCCTCAGAAGGCTTACAGAAACCTA
GGCACACTGCTTCTACCCTTTGAGCTAAAAAAACAGAAACCTAACTTGATGCATCGGTAC
TATTTCCATAGAGCTGACATGGGCAAAATCATGAAATAGAATCTGTTCCATAAATTATTT
CTTTAAATTTTCTCTTAATTTTGCCTTTAGGAAAAAATTAAAATTGTTCAAAGACAGTTT
GCTGTCACTGGTGCTGCCCCAAAGCTTTCCAATCCTCTAGGAATTTTTATGAATTAAATG
GTTGCTATGGGAAGGTCAAGATTCATCCAAGAGTATCATGGTATAAATTTAATGGTTTGC
AACTGTTTTAATTTTTCTTTGCCTGTGCCAGTTATACAATGCAGTCAACCCCCTTTTCAG
TAGCTTCTGTTCATTAGCCTGTGTTTTTCCAGGCAGTAACTCCCAAAAGGCTTTTCTTAG
TGATTGTAAAGAAAGAAAATCGCATCTAGGCCTGTGCTGCAAAGCTGGGTGGTCTGTCTT
TACTTTCTAGCAAATTGAGTTGATGGATTTAAGATAAGCCTTTGGGGTTCCTGTCACAGT
TTCCTGGGCTCTGAGAAAGGGTTGGGCCTCCTTTACTCTCAGGGTTTTGAGTATTTTTCT
AATGTTTGTAAGTTCTCTTTTACTCCTCTAATAAAAATGAAAGCTCTCTGCCAAAAAAAA
AAAAAAGTCTTTGATTGGTTTGGAGATCTAGGAGAAAAAAATAAGTATACCTGAGACCTT
CAGTTGGTCTTTTATTTATTTCAAATAAAAAGTAGTTTGATAAGCTACCAGAGTTAGTGC
TTTTTTAAAAACATTCTCTGAAGAGATAGGAACTCTCCCTCAGGAAACCTATAAAAGCTA
TTCCCAATACATTGCAATTGCTTTAGATTTTTAGTCCTTTGGAGCAAACGTCTGATGTTA
TGTCTGATGTTATGTCTGATGTTATGTTTTTAGAGCTGTGGGGAAGAAAATGTTTAAAAA
AATTAAGGGGTGTTATTGAAACAGTGATTTTCTGGCTGAATTATGTGCGAGCAAAGTTTT
AGGGCAGCTGTCCAGTTCTCGGTCTGTTTTCCTGACAGTAAAGCAGATAGTAAGCAGTGT
CTTGACAAGTGATTTGCTTATTCCATACTGACATCTAAAGGCATTAGCCTTCTGTTTGAC
AACCCTGGGGATACCCCTCTGCACCGTGACTTATTAATGTTTTTTTAGACAAGGCTAAAC
CAGGATGACTCTATGTATTTGTAGTTTCACTCTTCACATACCAGCTGCTAAAAGAAAAAC
CATGACTTTAATCTTGTCTTGAAATGACTCCTGATTGTTAAATTCATCCAAACCCTTCCT
CTTCAGGGAGGGTTGCTGCTAGTAACATCAGTTTTCAATGTTCTGCTTTAGATATGTGTC
CTATGGGAGTCTGGAAACTGTAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               385-480, + strand, RNAz p=0.895845
               

               
               854-973, - strand, RNAz p=0.583063

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-480, + strand, RNAz p=0.895845
               

               
               854-973, - strand, RNAz p=0.583063

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-730, gnl|bosTau2|chr7 (47088835-47088100)
               

               
               1-730, gnl|Hg17|chr5 (157118083-157118841)
               


               
               757-1683, gnl|bosTau2|chr7 (47088093-47087162)
               

               
               757-1683, gnl|Hg17|chr5 (157118868-157119809)
               

               
               757-1683, gnl|Mm7|chr11 (45886460-45885595)
               


               
               1692-2184, gnl|bosTau2|chr7 (47087177-47086685)
               

               
               1692-2184, gnl|Hg17|chr5 (157119794-157120276)
               

               
               1692-2184, gnl|Mm7|chr11 (45885610-45885039)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-730, gnl|bosTau2|chr7 (47088835-47088100)
               

               
               1-730, gnl|Hg17|chr5 (157118083-157118841)
               


               
               757-1683, gnl|bosTau2|chr7 (47088093-47087162)
               

               
               757-1683, gnl|Hg17|chr5 (157118868-157119809)
               

               
               757-1683, gnl|Mm7|chr11 (45886460-45885595)
               


               
               1692-2184, gnl|bosTau2|chr7 (47087177-47086685)
               

               
               1692-2184, gnl|Hg17|chr5 (157119794-157120276)
               

               
               1692-2184, gnl|Mm7|chr11 (45885610-45885039)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	385-480, + strand, RNAz p=0.895845
	854-973, - strand, RNAz p=0.583063

	1-730, gnl\|bosTau2\|chr7 (47088835-47088100)
	1-730, gnl\|Hg17\|chr5 (157118083-157118841)

	757-1683, gnl\|bosTau2\|chr7 (47088093-47087162)
	757-1683, gnl\|Hg17\|chr5 (157118868-157119809)
	757-1683, gnl\|Mm7\|chr11 (45886460-45885595)

	1692-2184, gnl\|bosTau2\|chr7 (47087177-47086685)
	1692-2184, gnl\|Hg17\|chr5 (157119794-157120276)
	1692-2184, gnl\|Mm7\|chr11 (45885610-45885039)

	hea (0.204499)
	mcp (0.170648)
	spl (0.143184)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)