Non-Coding RNA Search

Ss1.1-Mixg-0010e04.3

Sequence:


               
               TTTTTAATTTTGATATAATACATTGTGTGAAAAAAGAAAATGGCTAATAAACTGTATTAA
ATCTTAAACAATGTATAAAGATTGTACTTAGCCAGTTCAAAGTGTATATTTATTCATAAT
GAATTATAACAGTTATATTTTTGTGTTTTCTTGTAAATGTTTCTTTTTCCTTAAATACAG
ATAATTCATTTGTATTGCTTATTTTATTATGAGCTACAAGAGGACTTCAGGAACAAGTAA
ACTTTATTAATATGGTTCAAGGCTGTTGCTATGAACTATCTCAAAAGGATGGTTATTTTA
AGTATAAATAGCTAATCGGGGTGGTAGGCCTATAAAATTAAATGCCTTGTATAAAATCCA
AAATGAACGCAAACTTGTTTTCACTTGTATTGACTTTATGTTGTACGATTCCAATCTTTG
TTCTGTTTGGCACTTGTATTTAATTCTACACCTTTGTAAGACATTTGTATATTGCGGATG
TGTTCATTCAAGCTATTTAATACCTGGCACTGTTAATACACAGTACTTTACTGTACAGAC
TGTTTTACTGTTTTAATTGTAGTTCTGTGTACTTTTTTTGGATGGGGCTGGCATGTTTTA
TTTGTTTTCTGGCAATACGACATGTGAGAATTTTGAAGCGTTTTGTTGTAGATGCTAACG
TGTCAGAATCCTTTACATTCAACTTTTCTAAGAAAAGCATTTTCAGTCTTGTAGTGTGTG
CTTACAGTAACTAATTTTGTTGAAAATGGTTTCAAGTTATTCAAATTTGTACAGGACTTG
TAAAGATTTGTTGACAGCAAAACATTGAAGAAAAGCTTATAGAATAAAAGCTATAAAGTA
TATATTAGGATCTGCAAACAATGAAGAATTATGTAATATATTGTACAAATGTAAGCAAAA
GGCTCTGAAATAAAACGCCATAGTTTGTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAATTTTGATATAATACATTGTGTGAAAAAAGAAAATGGCTAATAAACTGTATTAA
ATCTTAAACAATGTATAAAGATTGTACTTAGCCAGTTCAAAGTGTATATTTATTCATAAT
GAATTATAACAGTTATATTTTTGTGTTTTCTTGTAAATGTTTCTTTTTCCTTAAATACAG
ATAATTCATTTGTATTGCTTATTTTATTATGAGCTACAAGAGGACTTCAGGAACAAGTAA
ACTTTATTAATATGGTTCAAGGCTGTTGCTATGAACTATCTCAAAAGGATGGTTATTTTA
AGTATAAATAGCTAATCGGGGTGGTAGGCCTATAAAATTAAATGCCTTGTATAAAATCCA
AAATGAACGCAAACTTGTTTTCACTTGTATTGACTTTATGTTGTACGATTCCAATCTTTG
TTCTGTTTGGCACTTGTATTTAATTCTACACCTTTGTAAGACATTTGTATATTGCGGATG
TGTTCATTCAAGCTATTTAATACCTGGCACTGTTAATACACAGTACTTTACTGTACAGAC
TGTTTTACTGTTTTAATTGTAGTTCTGTGTACTTTTTTTGGATGGGGCTGGCATGTTTTA
TTTGTTTTCTGGCAATACGACATGTGAGAATTTTGAAGCGTTTTGTTGTAGATGCTAACG
TGTCAGAATCCTTTACATTCAACTTTTCTAAGAAAAGCATTTTCAGTCTTGTAGTGTGTG
CTTACAGTAACTAATTTTGTTGAAAATGGTTTCAAGTTATTCAAATTTGTACAGGACTTG
TAAAGATTTGTTGACAGCAAAACATTGAAGAAAAGCTTATAGAATAAAAGCTATAAAGTA
TATATTAGGATCTGCAAACAATGAAGAATTATGTAATATATTGTACAAATGTAAGCAAAA
GGCTCTGAAATAAAACGCCATAGTTTGTGAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-235, - strand, RNAz p=0.933377
               

               
               432-551, - strand, RNAz p=0.676924

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-235, - strand, RNAz p=0.933377
               

               
               432-551, - strand, RNAz p=0.676924

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-931, gnl|bosTau2|chr28 (2296312-2297247)
               

               
               1-931, gnl|Hg17|chr1 (231657187-231656258)
               

               
               1-931, gnl|Mm7|chr13 (13564257-13565183)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-931, gnl|bosTau2|chr28 (2296312-2297247)
               

               
               1-931, gnl|Hg17|chr1 (231657187-231656258)
               

               
               1-931, gnl|Mm7|chr13 (13564257-13565183)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               pro (1.02407)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	120-235, - strand, RNAz p=0.933377
	432-551, - strand, RNAz p=0.676924

	1-931, gnl\|bosTau2\|chr28 (2296312-2297247)
	1-931, gnl\|Hg17\|chr1 (231657187-231656258)
	1-931, gnl\|Mm7\|chr13 (13564257-13565183)

	pro (1.02407)
	ret (0.257467)
	tra (0.246184)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	thg (0.126791)
	bla (0.124347)