Non-Coding RNA Search

Ss1.1-Mixg-0010e07.3

Sequence:


               
               TACTGGAGTCTAACTTGAATGTGACATAACTTACAGAGTTATGTCCTTATGCATTGAAAC
ACATGTGCCAGAAAAGGAGAGAAAAAGGAAAAAGAAAACATCCAAACTCCAGTATGAATC
CAACATCACAGGAAAATACATACAAAACTAACTTAGGACTGCAAATTCTACAACTTTGTC
CACTATCAGTGTTGTCTACCGAGAGGACCAGGGCCTAAACACCTTGCTGCTTACTTAAAA
TACAATCTATGTTCTTTGGAAAGCATGTTTCCAGAGAACCTACTAGAAGCAACCAGAAAA
CTAAGTCAAGATCCATAAGTGATTCCTAATGAAAAATTTAAAAACTGCAGGTATGTTTTA
GTAACTTTAAGGGCTTTATTCCAGGAAATACCCATAGAGGGAGAGATTATCATCACCTTA
TGGGGCAGTCAGACCTTAACAGAGATAATCTGCTAGGATTTGGGAATGAATAAGAAAGCT
ATTCTTCAGAAATTATTTAAATAATCTTTAAAGAATGAACAATTTGGGGTATTGGGTTTT
TTCCCTTCTTCTGAGACATTCTGCTATTTTACTTTTTGTAACTGCTTGTTTATGTGAAAG
GGGTTATGTTTACTTAGTTACCTGTGCAAGCCAATCCGACTACACTAGGTGAAAGAAGCC
ACCCACTCCCCAAGTCCCTCTGGCCAGGAGCCCCTCAAGCCTTTTACGTCAGGGGCTCCA
CTCAGAAAATAGGAAGCAGCTGTTCTCTACATTCCTGGCCAGAAATGGATCTCACTCAGT
TTCTAGGCATCAGACCAATGATCAGCACCACCATGATCCATGTCCCTGCCTGTGCATTTC
CATCCGTCTGCCCCACTCACCTTCTCAGGAAATCTTGGCCTCTGCTAAGCTGTGTTTGGT
CCTTGAGAAGTGGGGGCGCCCTGAAGGAAACTACCACTCATGCTGTTGGTGCTGCTTGCA
ACCTAGAAAGCTGCACTGGTGCTGATGCTCCTTAGGACCCAAGGGGAGGGATGTAACTCA
GCCCTAGGCTTCTTGAATAACCTCTGCAATCTGTTTTCTGCCCTGGCGCCTATGAGACCC
AGTATGTCAGCAGAAAAGGAAGGGAGGGAGAAAGAGAGGCATGTCCTCTTGCAGCCCAGC
CTTCTGCACAGATGGAAGCGCCTCAGGGCTGTTGAGAGAAAGGTTTTATTCCACATCCAT
GACCTGACCTCATGCTGTGTGGAACTGACCCCCTCAAAGAGGGCTGGACGGCAGGTCTCT
GTACTCAGGTACCTCTTTCAGGGTTTTCTAACCCTGACACAGACTGTATGCACCTTCTCT
CATCCATGCTGTTCTGTGTAATTTAGCTTTGCCTGGCTAAGGCTGCTTCTGAATTATTTG
TAAAATTTGCTCTATATTTATAATAAAAATTATATATCAGACATCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGGAGTCTAACTTGAATGTGACATAACTTACAGAGTTATGTCCTTATGCATTGAAAC
ACATGTGCCAGAAAAGGAGAGAAAAAGGAAAAAGAAAACATCCAAACTCCAGTATGAATC
CAACATCACAGGAAAATACATACAAAACTAACTTAGGACTGCAAATTCTACAACTTTGTC
CACTATCAGTGTTGTCTACCGAGAGGACCAGGGCCTAAACACCTTGCTGCTTACTTAAAA
TACAATCTATGTTCTTTGGAAAGCATGTTTCCAGAGAACCTACTAGAAGCAACCAGAAAA
CTAAGTCAAGATCCATAAGTGATTCCTAATGAAAAATTTAAAAACTGCAGGTATGTTTTA
GTAACTTTAAGGGCTTTATTCCAGGAAATACCCATAGAGGGAGAGATTATCATCACCTTA
TGGGGCAGTCAGACCTTAACAGAGATAATCTGCTAGGATTTGGGAATGAATAAGAAAGCT
ATTCTTCAGAAATTATTTAAATAATCTTTAAAGAATGAACAATTTGGGGTATTGGGTTTT
TTCCCTTCTTCTGAGACATTCTGCTATTTTACTTTTTGTAACTGCTTGTTTATGTGAAAG
GGGTTATGTTTACTTAGTTACCTGTGCAAGCCAATCCGACTACACTAGGTGAAAGAAGCC
ACCCACTCCCCAAGTCCCTCTGGCCAGGAGCCCCTCAAGCCTTTTACGTCAGGGGCTCCA
CTCAGAAAATAGGAAGCAGCTGTTCTCTACATTCCTGGCCAGAAATGGATCTCACTCAGT
TTCTAGGCATCAGACCAATGATCAGCACCACCATGATCCATGTCCCTGCCTGTGCATTTC
CATCCGTCTGCCCCACTCACCTTCTCAGGAAATCTTGGCCTCTGCTAAGCTGTGTTTGGT
CCTTGAGAAGTGGGGGCGCCCTGAAGGAAACTACCACTCATGCTGTTGGTGCTGCTTGCA
ACCTAGAAAGCTGCACTGGTGCTGATGCTCCTTAGGACCCAAGGGGAGGGATGTAACTCA
GCCCTAGGCTTCTTGAATAACCTCTGCAATCTGTTTTCTGCCCTGGCGCCTATGAGACCC
AGTATGTCAGCAGAAAAGGAAGGGAGGGAGAAAGAGAGGCATGTCCTCTTGCAGCCCAGC
CTTCTGCACAGATGGAAGCGCCTCAGGGCTGTTGAGAGAAAGGTTTTATTCCACATCCAT
GACCTGACCTCATGCTGTGTGGAACTGACCCCCTCAAAGAGGGCTGGACGGCAGGTCTCT
GTACTCAGGTACCTCTTTCAGGGTTTTCTAACCCTGACACAGACTGTATGCACCTTCTCT
CATCCATGCTGTTCTGTGTAATTTAGCTTTGCCTGGCTAAGGCTGCTTCTGAATTATTTG
TAAAATTTGCTCTATATTTATAATAAAAATTATATATCAGACATCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               642-758, + strand, RNAz p=0.999893

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-758, + strand, RNAz p=0.999893

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               712-783, - strand, RNAmicro p=0.990376

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               712-783, - strand, RNAmicro p=0.990376

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of X14831, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of X14831, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-762, gnl|bosTau2|chr18 (45179704-45178922)
               

               
               1-762, gnl|Hg17|chr19 (47704744-47703934)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-762, gnl|bosTau2|chr18 (45179704-45178922)
               

               
               1-762, gnl|Hg17|chr19 (47704744-47703934)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (4.09516)
               

               
               nco (1.4556)
               

               
               rec (1.03842)
               

               
               lin (0.145603)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (4.09516)
               

               
               nco (1.4556)
               

               
               rec (1.03842)
               

               
               lin (0.145603)
               

               
               nbm (0.0993246)

	1-762, gnl\|bosTau2\|chr18 (45179704-45178922)
	1-762, gnl\|Hg17\|chr19 (47704744-47703934)

	col (4.09516)
	nco (1.4556)
	rec (1.03842)
	lin (0.145603)
	nbm (0.0993246)