Non-Coding RNA Search

Ss1.1-Mixg-0010e10.5

Sequence:


               
               AGAAATGATAGAGAAAAAATGAATTAGGACTCCAAGCATCAGGATAGGGCCAGATGCAGA
TGGCTGGAGATGGGTGCAGATCACAGGGATTTCGAAATTCTGAGAAAGCTGCATCGTTGC
CTCAAAGTGGAGTGGCTACTGCAAATGGGAAGCTAGAATCCACTTCTGTCAGTTGATAGT
TTGTTTTGGGAACCAGTTGACTTTGGAGGATTTGTATTTCCCAGTGTTTAAGCAAGTATT
TCCTGACCAGCTCTACTGAAAGACAACCCAGACTACCTTGTTTTTCCTCTGGATTATCAA
GTGCTATAGTCAGACTAAATATTGGGGGAAGGGACCAATAATGTCTAAAAGATGTTAGTG
TCTTCCCACTCTAGACACAGAAGAGAGATGAGTGATTCTTACCCAGTCAGAGCTGCTGGG
ATTCAGAGTATTTGGGACTATGCCTAAGGGGAAGAGAGATTTTTGCAATGCAGTTTCCCA
GGTCTTGGGATATTTGATGGACCTGATGACTGATTATCTCTGTCTAGCAGCCTGTGTTTT
AGCCTTTCCTTACTTCTCATCTAACTGGGTAATCTGAACCCCCTTCCCTCAATGAACTCT
GCCCTATAGCCTCTGAGAAAATAGCCTGCAGGTCTGGACCATCCATCTTCTAACCTACTG
TAAATTTCTGTAGTGGCTGTCTTATGTTAAGATATAATAAAAAATTATTGTATATAGTTT
CTATTAAGTATTAAAATGTTATGAAAATGTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATGATAGAGAAAAAATGAATTAGGACTCCAAGCATCAGGATAGGGCCAGATGCAGA
TGGCTGGAGATGGGTGCAGATCACAGGGATTTCGAAATTCTGAGAAAGCTGCATCGTTGC
CTCAAAGTGGAGTGGCTACTGCAAATGGGAAGCTAGAATCCACTTCTGTCAGTTGATAGT
TTGTTTTGGGAACCAGTTGACTTTGGAGGATTTGTATTTCCCAGTGTTTAAGCAAGTATT
TCCTGACCAGCTCTACTGAAAGACAACCCAGACTACCTTGTTTTTCCTCTGGATTATCAA
GTGCTATAGTCAGACTAAATATTGGGGGAAGGGACCAATAATGTCTAAAAGATGTTAGTG
TCTTCCCACTCTAGACACAGAAGAGAGATGAGTGATTCTTACCCAGTCAGAGCTGCTGGG
ATTCAGAGTATTTGGGACTATGCCTAAGGGGAAGAGAGATTTTTGCAATGCAGTTTCCCA
GGTCTTGGGATATTTGATGGACCTGATGACTGATTATCTCTGTCTAGCAGCCTGTGTTTT
AGCCTTTCCTTACTTCTCATCTAACTGGGTAATCTGAACCCCCTTCCCTCAATGAACTCT
GCCCTATAGCCTCTGAGAAAATAGCCTGCAGGTCTGGACCATCCATCTTCTAACCTACTG
TAAATTTCTGTAGTGGCTGTCTTATGTTAAGATATAATAAAAAATTATTGTATATAGTTT
CTATTAAGTATTAAAATGTTATGAAAATGTAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26365633|dbj|BAC25264.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26365633|dbj|BAC25264.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-754, gnl|bosTau2|chr5 (26454924-26455641)
               

               
               46-754, gnl|Hg17|chr12 (47334227-47333472)
               

               
               46-754, gnl|Mm7|chr15 (98505820-98505078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-754, gnl|bosTau2|chr5 (26454924-26455641)
               

               
               46-754, gnl|Hg17|chr12 (47334227-47333472)
               

               
               46-754, gnl|Mm7|chr15 (98505820-98505078)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fce (0.543183)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	46-754, gnl\|bosTau2\|chr5 (26454924-26455641)
	46-754, gnl\|Hg17\|chr12 (47334227-47333472)
	46-754, gnl\|Mm7\|chr15 (98505820-98505078)

	fce (0.543183)
	fty (0.17584)
	fhi (0.169578)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	pla (0.133672)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	jej (0.0989218)
	ldo (0.0970026)