Ss1.1-Mixg-0010g03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCATGCTGGACCCGCCCCGCAAGGAGGTCACGGGCTCCATCCAGCTGTGCCGCGATGCT GGCATCCGGGTGATCATGATCACAGGGGACAACAAGGGCACGGCCATTGCCATCTGCCGA CGAATTGGCATCTTTGGGGAGAACGAGGATGTGGCCGACCGAGCCTACACTGGACGGGAG TTCGACGACCTGCCCCTGCCTGAGCAGCGGGAGGCCTGCCGGCGCGCCTGCTGCTTCGCC CGCGTGGAGCCCTCCCACAAGTCCAAGATCGTGGAGTATCTGCAGTCCTATGATGAGATC ACGGCCATGACAGGTGACGGTGTCAATGACGCCCCCGCCCTGAAGAAGGCCGAGATCGGC ATTGCCATGGGATCCGGCACTGCCGTGGCCAAGACAGCCTCCGAGATGGTGCTGGCGGAC GACAACTTCTCCACCATCGTGGCCGCGGTGGAGGAGGGCCGCGCCATCTACAACAACATG AAGCAGTTCATCCGCTACCTCATCTCTTCCAACGTGGGCGAGGTGGTCTGCATCTTCCTG ACAGCTGCCCTGGGGCTGCCTGAGGCCTTGATCCCCGTGCAGCTGCTGTGGGTGAACCTG GTGACGGACGGGCTCCCGGCCACAGCCTTGGGCTTCAACCCTCCAGACCTCGACATCATG GACCGGCCCCCCCGGAGCCCCAAAGAGCCCCTCATCAGCGGCTGGCTCTTCTTCCGCTAC ATGGCAATTGGGGGCTACGTGGGTGCAGCCACTGTGGGGGCAGCAGCCTGGTGGTTCCTG TACGCTGACGATGGCCCTCATGTCACCTACAGCCAGCTGACTCACTTCATGAAGTGCGGA GAGCACAACCCCGACTTTGAGGGTGTGGACTGTGAGGTCTTCGAGGCCCCCCAGCCCATG ACCATGGCCTTGTCTGTGCTGGTCACCATCGAGATGTGCAATGCTCTCAACAGCCTGTCT GAGAACCAGTCCCTCATGCGGATGCCGCCCTGGGTCAACATCTGGCTGGTGGGCTCCATC GGCCTCTCCATGTCCCTCCACTTCCTCATCCTGTACGTGGACCCTCTGCCGATGATCTTC AAGCTCCAGGCCCTGGACCTGGCCCACTGGCTCATGGTTCTTAAGATTTCCTTACCAGTC ATCGGGCTCGACGAGATCCTCAAGTTCGTTGCGCGGAACTATCTAGAGGGATAACCCGTT CCCCCTCCTCCACCTCTTTGAACCGTGTCACAGATCCAGAAGATGAAAGAAGAAAGTGAC CAGTCCTACTGCCCCCTCCACCCTCATAGTGATGCATCTTCAGCCAGAGCTGTGGCACAG ACCCCTCCCCGTCCCCACCCCCACCCCCACATTCTTGTTTATAAACACGACGTCCCCTTC TCTTCTCCTCTCCCCTTCAGCGTCCCACACCCCCCTCCCCCGCCCCCGGTAACACCTCCC TCCCCAACCCCATGGGGCTTGCAGGGACAAGGCGACCGATTGAGCTGAGCTGCTTATTTA TTGAAAATAAATGACAGAAAACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCATGCTGGACCCGCCCCGCAAGGAGGTCACGGGCTCCATCCAGCTGTGCCGCGATGCT GGCATCCGGGTGATCATGATCACAGGGGACAACAAGGGCACGGCCATTGCCATCTGCCGA CGAATTGGCATCTTTGGGGAGAACGAGGATGTGGCCGACCGAGCCTACACTGGACGGGAG TTCGACGACCTGCCCCTGCCTGAGCAGCGGGAGGCCTGCCGGCGCGCCTGCTGCTTCGCC CGCGTGGAGCCCTCCCACAAGTCCAAGATCGTGGAGTATCTGCAGTCCTATGATGAGATC ACGGCCATGACAGGTGACGGTGTCAATGACGCCCCCGCCCTGAAGAAGGCCGAGATCGGC ATTGCCATGGGATCCGGCACTGCCGTGGCCAAGACAGCCTCCGAGATGGTGCTGGCGGAC GACAACTTCTCCACCATCGTGGCCGCGGTGGAGGAGGGCCGCGCCATCTACAACAACATG AAGCAGTTCATCCGCTACCTCATCTCTTCCAACGTGGGCGAGGTGGTCTGCATCTTCCTG ACAGCTGCCCTGGGGCTGCCTGAGGCCTTGATCCCCGTGCAGCTGCTGTGGGTGAACCTG GTGACGGACGGGCTCCCGGCCACAGCCTTGGGCTTCAACCCTCCAGACCTCGACATCATG GACCGGCCCCCCCGGAGCCCCAAAGAGCCCCTCATCAGCGGCTGGCTCTTCTTCCGCTAC ATGGCAATTGGGGGCTACGTGGGTGCAGCCACTGTGGGGGCAGCAGCCTGGTGGTTCCTG TACGCTGACGATGGCCCTCATGTCACCTACAGCCAGCTGACTCACTTCATGAAGTGCGGA GAGCACAACCCCGACTTTGAGGGTGTGGACTGTGAGGTCTTCGAGGCCCCCCAGCCCATG ACCATGGCCTTGTCTGTGCTGGTCACCATCGAGATGTGCAATGCTCTCAACAGCCTGTCT GAGAACCAGTCCCTCATGCGGATGCCGCCCTGGGTCAACATCTGGCTGGTGGGCTCCATC GGCCTCTCCATGTCCCTCCACTTCCTCATCCTGTACGTGGACCCTCTGCCGATGATCTTC AAGCTCCAGGCCCTGGACCTGGCCCACTGGCTCATGGTTCTTAAGATTTCCTTACCAGTC ATCGGGCTCGACGAGATCCTCAAGTTCGTTGCGCGGAACTATCTAGAGGGATAACCCGTT CCCCCTCCTCCACCTCTTTGAACCGTGTCACAGATCCAGAAGATGAAAGAAGAAAGTGAC CAGTCCTACTGCCCCCTCCACCCTCATAGTGATGCATCTTCAGCCAGAGCTGTGGCACAG ACCCCTCCCCGTCCCCACCCCCACCCCCACATTCTTGTTTATAAACACGACGTCCCCTTC TCTTCTCCTCTCCCCTTCAGCGTCCCACACCCCCCTCCCCCGCCCCCGGTAACACCTCCC TCCCCAACCCCATGGGGCTTGCAGGGACAAGGCGACCGATTGAGCTGAGCTGCTTATTTA TTGAAAATAAATGACAGAAAACTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
| 309-530, gnl|bosTau2|chr17 (30346223-30346002) | |
| 309-530, gnl|canFam2|chr26 (11219454-11219705) | |
| 309-530, gnl|danRer3|chr21 (7870520-7870764) | |
| 309-530, gnl|dasNov1|scaffold_28983 (8364-8114) | |
| 309-530, gnl|echTel1|scaffold_219181 (5639-5379) | |
| 309-530, gnl|fr1|chrUn (56442667-56442916) | |
| 309-530, gnl|galGal2|chr15 (5268802-5268553) | |
| 309-530, gnl|hg17|chr12 (109242732-109242983) | |
| 309-530, gnl|Hg17|chr12 (109242752-109242973) | |
| 309-530, gnl|loxAfr1|scaffold_14582 (36214-36464) | |
| 309-530, gnl|mm7|chr5 (121694440-121694190) | |
| 309-530, gnl|Mm7|chr5 (121694419-121694198) | |
| 309-530, gnl|monDom2|scaffold_97 (975574-975327) | |
| 309-530, gnl|oryCun1|scaffold_197368 (6755-7006) | |
| 309-530, gnl|panTro1|chr10 (111838353-111838604) | |
| 309-530, gnl|rheMac2|chr11 (111253303-111253554) | |
| 309-530, gnl|rn3|chr12 (35172882-35173130) | |
| 309-530, gnl|tetNig1|chr12 (11602259-11602496) | |
| 309-530, gnl|xenTro1|scaffold_501 (577942-577691) | |
| 532-731, gnl|bosTau2|chr17 (30345584-30345385) | |
| 532-731, gnl|canFam2|chr26 (11220141-11220319) | |
| 532-731, gnl|danRer3|chr21 (7871947-7872109) | |
| 532-731, gnl|dasNov1|scaffold_28983 (7661-7480) | |
| 532-731, gnl|echTel1|scaffold_294319 (875-711) | |
| 532-731, gnl|fr1|chrUn (56442974-56443149) | |
| 532-731, gnl|galGal2|chr15 (5267802-5267629) | |
| 532-731, gnl|hg17|chr12 (109243736-109243917) | |
| 532-731, gnl|Hg17|chr12 (109243768-109243957) | |
| 532-731, gnl|loxAfr1|scaffold_14582 (36882-37062) | |
| 532-731, gnl|mm7|chr5 (121693895-121693714) | |
| 532-731, gnl|Mm7|chr5 (121693871-121693672) | |
| 532-731, gnl|monDom2|scaffold_97 (975054-974879) | |
| 532-731, gnl|oryCun1|scaffold_197368 (7522-7704) | |
| 532-731, gnl|panTro1|chr10 (111839357-111839538) | |
| 532-731, gnl|rheMac2|chr11 (111254313-111254494) | |
| 532-731, gnl|rn3|chr12 (35173416-35173597) | |
| 532-731, gnl|tetNig1|chr12 (11602549-11602720) | |
| 532-731, gnl|xenTro1|scaffold_501 (577341-577164) | |
| 942-1075, gnl|bosTau2|chr19 (19125932-19125799) | |
| 942-1075, gnl|danRer3|chr3 (18378436-18378301) | |
| 942-1075, gnl|dasNov1|scaffold_13617 (4223-4359) | |
| 942-1075, gnl|echTel1|scaffold_109458 (552-693) | |
| 942-1075, gnl|fr1|chrUn (56443844-56443713) | |
| 942-1075, gnl|galGal2|chr19 (3050896-3050753) | |
| 942-1075, gnl|hg17|chr17 (3779362-3779517) | |
| 942-1075, gnl|Hg17|chr17 (3779497-3779367) | |
| 942-1075, gnl|loxAfr1|scaffold_18353 (32802-32958) | |
| 942-1075, gnl|mm7|chr11 (73070164-73070011) | |
| 942-1075, gnl|Mm7|chr11 (73070025-73070158) | |
| 942-1075, gnl|monDom2|scaffold_5 (119375422-119375561) | |
| 942-1075, gnl|oryCun1|scaffold_213267 (2059-2209) | |
| 942-1075, gnl|panTro1|chr19 (4079375-4079530) | |
| 942-1075, gnl|rheMac2|chr16 (3651639-3651794) | |
| 942-1075, gnl|rn3|chr10 (59893281-59893128) | |
| 942-1075, gnl|tetNig1|chr7 (1996587-1996719) | |
| 942-1075, gnl|xenTro1|scaffold_21 (2073731-2073856) | |
| 947-1070, gnl|bosTau2|chr17 (30342545-30342422) | |
| 947-1070, gnl|canFam2|chr26 (11223054-11223197) | |
| 947-1070, gnl|danRer3|chr21 (7873786-7873913) | |
| 947-1070, gnl|dasNov1|scaffold_28983 (4922-4779) | |
| 947-1070, gnl|echTel1|scaffold_109458 (692-552) | |
| 947-1070, gnl|fr1|chrUn (56443702-56443843) | |
| 947-1070, gnl|galGal2|chr15 (5265684-5265542) | |
| 947-1070, gnl|hg17|chr12 (109246507-109246650) | |
| 947-1070, gnl|Hg17|chr12 (109246519-109246642) | |
| 947-1070, gnl|loxAfr1|scaffold_14582 (39529-39670) | |
| 947-1070, gnl|mm7|chr5 (121691873-121691729) | |
| 947-1070, gnl|Mm7|chr5 (121691855-121691735) | |
| 947-1070, gnl|monDom2|scaffold_97 (973630-973489) | |
| 947-1070, gnl|oryCun1|scaffold_80581 (867-1009) | |
| 947-1070, gnl|panTro1|chr10 (111842124-111842267) | |
| 947-1070, gnl|rheMac2|chr11 (111258007-111258150) | |
| 947-1070, gnl|rn3|chr12 (35175398-35175542) | |
| 947-1070, gnl|tetNig1|chr12 (11603208-11603334) | |
| 947-1070, gnl|xenTro1|scaffold_501 (573646-573502) | |
| 1231-1524, gnl|bosTau2|chr25 (24878518-24878217) | |
| 1231-1524, gnl|Hg17|chr16 (28822999-28823286) | |
| 1231-1524, gnl|Mm7|chr7 (122542687-122542418) |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 309-530, gnl|bosTau2|chr17 (30346223-30346002) | |
| 309-530, gnl|canFam2|chr26 (11219454-11219705) | |
| 309-530, gnl|danRer3|chr21 (7870520-7870764) | |
| 309-530, gnl|dasNov1|scaffold_28983 (8364-8114) | |
| 309-530, gnl|echTel1|scaffold_219181 (5639-5379) | |
| 309-530, gnl|fr1|chrUn (56442667-56442916) | |
| 309-530, gnl|galGal2|chr15 (5268802-5268553) | |
| 309-530, gnl|hg17|chr12 (109242732-109242983) | |
| 309-530, gnl|Hg17|chr12 (109242752-109242973) | |
| 309-530, gnl|loxAfr1|scaffold_14582 (36214-36464) | |
| 309-530, gnl|mm7|chr5 (121694440-121694190) | |
| 309-530, gnl|Mm7|chr5 (121694419-121694198) | |
| 309-530, gnl|monDom2|scaffold_97 (975574-975327) | |
| 309-530, gnl|oryCun1|scaffold_197368 (6755-7006) | |
| 309-530, gnl|panTro1|chr10 (111838353-111838604) | |
| 309-530, gnl|rheMac2|chr11 (111253303-111253554) | |
| 309-530, gnl|rn3|chr12 (35172882-35173130) | |
| 309-530, gnl|tetNig1|chr12 (11602259-11602496) | |
| 309-530, gnl|xenTro1|scaffold_501 (577942-577691) | |
| 532-731, gnl|bosTau2|chr17 (30345584-30345385) | |
| 532-731, gnl|canFam2|chr26 (11220141-11220319) | |
| 532-731, gnl|danRer3|chr21 (7871947-7872109) | |
| 532-731, gnl|dasNov1|scaffold_28983 (7661-7480) | |
| 532-731, gnl|echTel1|scaffold_294319 (875-711) | |
| 532-731, gnl|fr1|chrUn (56442974-56443149) | |
| 532-731, gnl|galGal2|chr15 (5267802-5267629) | |
| 532-731, gnl|hg17|chr12 (109243736-109243917) | |
| 532-731, gnl|Hg17|chr12 (109243768-109243957) | |
| 532-731, gnl|loxAfr1|scaffold_14582 (36882-37062) | |
| 532-731, gnl|mm7|chr5 (121693895-121693714) | |
| 532-731, gnl|Mm7|chr5 (121693871-121693672) | |
| 532-731, gnl|monDom2|scaffold_97 (975054-974879) | |
| 532-731, gnl|oryCun1|scaffold_197368 (7522-7704) | |
| 532-731, gnl|panTro1|chr10 (111839357-111839538) | |
| 532-731, gnl|rheMac2|chr11 (111254313-111254494) | |
| 532-731, gnl|rn3|chr12 (35173416-35173597) | |
| 532-731, gnl|tetNig1|chr12 (11602549-11602720) | |
| 532-731, gnl|xenTro1|scaffold_501 (577341-577164) | |
| 942-1075, gnl|bosTau2|chr19 (19125932-19125799) | |
| 942-1075, gnl|danRer3|chr3 (18378436-18378301) | |
| 942-1075, gnl|dasNov1|scaffold_13617 (4223-4359) | |
| 942-1075, gnl|echTel1|scaffold_109458 (552-693) | |
| 942-1075, gnl|fr1|chrUn (56443844-56443713) | |
| 942-1075, gnl|galGal2|chr19 (3050896-3050753) | |
| 942-1075, gnl|hg17|chr17 (3779362-3779517) | |
| 942-1075, gnl|Hg17|chr17 (3779497-3779367) | |
| 942-1075, gnl|loxAfr1|scaffold_18353 (32802-32958) | |
| 942-1075, gnl|mm7|chr11 (73070164-73070011) | |
| 942-1075, gnl|Mm7|chr11 (73070025-73070158) | |
| 942-1075, gnl|monDom2|scaffold_5 (119375422-119375561) | |
| 942-1075, gnl|oryCun1|scaffold_213267 (2059-2209) | |
| 942-1075, gnl|panTro1|chr19 (4079375-4079530) | |
| 942-1075, gnl|rheMac2|chr16 (3651639-3651794) | |
| 942-1075, gnl|rn3|chr10 (59893281-59893128) | |
| 942-1075, gnl|tetNig1|chr7 (1996587-1996719) | |
| 942-1075, gnl|xenTro1|scaffold_21 (2073731-2073856) | |
| 947-1070, gnl|bosTau2|chr17 (30342545-30342422) | |
| 947-1070, gnl|canFam2|chr26 (11223054-11223197) | |
| 947-1070, gnl|danRer3|chr21 (7873786-7873913) | |
| 947-1070, gnl|dasNov1|scaffold_28983 (4922-4779) | |
| 947-1070, gnl|echTel1|scaffold_109458 (692-552) | |
| 947-1070, gnl|fr1|chrUn (56443702-56443843) | |
| 947-1070, gnl|galGal2|chr15 (5265684-5265542) | |
| 947-1070, gnl|hg17|chr12 (109246507-109246650) | |
| 947-1070, gnl|Hg17|chr12 (109246519-109246642) | |
| 947-1070, gnl|loxAfr1|scaffold_14582 (39529-39670) | |
| 947-1070, gnl|mm7|chr5 (121691873-121691729) | |
| 947-1070, gnl|Mm7|chr5 (121691855-121691735) | |
| 947-1070, gnl|monDom2|scaffold_97 (973630-973489) | |
| 947-1070, gnl|oryCun1|scaffold_80581 (867-1009) | |
| 947-1070, gnl|panTro1|chr10 (111842124-111842267) | |
| 947-1070, gnl|rheMac2|chr11 (111258007-111258150) | |
| 947-1070, gnl|rn3|chr12 (35175398-35175542) | |
| 947-1070, gnl|tetNig1|chr12 (11603208-11603334) | |
| 947-1070, gnl|xenTro1|scaffold_501 (573646-573502) | |
| 1231-1524, gnl|bosTau2|chr25 (24878518-24878217) | |
| 1231-1524, gnl|Hg17|chr16 (28822999-28823286) | |
| 1231-1524, gnl|Mm7|chr7 (122542687-122542418) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| nms (3.20787) | |
| ton (1.9305) | |
| mas (1.68244) | |
| ssp (0.948638) | |
| ldo (0.582016) | |
| nep (0.551775) | |
| nca (0.273748) | |
| ste (0.270416) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| jca (0.11396) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (3.20787) | |
| ton (1.9305) | |
| mas (1.68244) | |
| ssp (0.948638) | |
| ldo (0.582016) | |
| nep (0.551775) | |
| nca (0.273748) | |
| ste (0.270416) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| jca (0.11396) |