Ss1.1-Mixg-0010h05.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTGGAGGGTCCACACTGGGGGACAGTTTTAATAAACCGCTACCACGACAACG GCGGCCATTTGGGCGTCGCCACATCGCAGACCCCGACAACGGGCCCGCAGGACACGGTAA CATCTGCACCACCTGACCGCCTCCAAAATGTTTCTCCGTTTCCATATGGTGTCTCGTCAG TGTTTTTAAATTTTTAAATAAACGGGGGGGGGGGGGAGGGCACACAAACAGCAAAGCCCC AGCCAAGTCCCAGGAAGACATTCCAGGCCGAGAGGGGTTCTAGCTACATCGTCTGGCCCC TGACGCCACGGTGCTTTGATGTTCACCTTCACTTCTTCAAGCCCAGAAGCCTCTGGAGGG CCCGGCATCCTGATGGCTGGGTCAACCCCCGTTCAGAGCGCAGGGCTGTGGGCAGGTACA GGGCTGCTCCCCCGAGTGGAGCTGGGGGTCCCCAGGGCCCGCCCACCCCTGCTCTGTGCC AGCTCTGGGCTGCCGAGGAGCCCCAGGGTGCCGGCACCCCAAGCCAGGGCCAGGCGGGGC GAGGAGACCACGAACAAAGGCACAGAGGCTGAGAACTCAGCACGGCCCCAAAGTGCAGGG CCCGGCGGCCGCAGCGGTGGCAGCGGGGAGGGAACCGGCGTGAGCTCAGCGCTGGACGGG CAACTCGGGCTCCATCCTGCAGCCAAGGGAAGCCTCTGCGGTACATCGGGGCCACGGGGA AAGTGGGGTGCAGCGAGGCCCAGACCCAGCCACTCCCCGCGGACGGGAACGCCAGGTGCA CCCCACCCTCCTGGGCCGGGGAGACCGGAGGGCTGGATCCACCCCAGGACCCGCTGGGCG CTCACGGGCCCCTCAGCGGCCACCGCCTCCGCCGCCGCCCCCGCCGCCACCCCCACCCTG GCTCCCAGCGTCTGGTGCTCCCGACATCATGAGGAAGAGGACCACGGGAATGATGTACAT CCAATATTTGGCGAAAAAGGACTTCTGCTCCTGGGGGTTCTTGGCCTTCTGAGCCTGCTC CATTTCCAGACGCTCGATGAAGGCCGCTGTCTCTGGACCTGGGGCGGGGACCGGCGGCTG CAGCTGCACGGAGGTGTTGAACAGCTCCAGGTCCACGTCCTCCACCTCGTGGCCCCGGCA GCCCCCGGGGTGTGTCACCACCGACACACCCACCACGTTGCCGGCCACGTCCACGTGCAG GGTCAGCTGGTCCGAGAGGTGAGACTCCAGCAGGGAGCATGCGGGGACAAAGGAGGAGAC GTAGCCACCGGATTCTGGGCCATCAGGGGCCCCAGGTCGTCGTGGGACCCGGACACGGTA CACGCCGTTCAGCGCTGCCACATCCCGGAGGCGGCCCCGCTCCTCCTCGTTGAGCTGCCG CTGTGACAGAGACAAAGTGCCATCCTGCTGGTTCCAGAGCAATGAGCCTCGCTTCCGGAA GTGGGCGCTGTCATCGATCTCAAATGAGTGCTCCAGCAGCAGCCCCACGGTGCCGCAGCC CTCGCCCTCTCGACTTTCAGCCCCAGCCCCCCGCACAGAGGCCCCGGACCTGCAACCACT ACCCCTCGCCCGGCTGGGGGCTGCTGCAGCCATCACCAAGAGCAGCAGCAGCCGAGTAGC CCCAGCGCGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTGGAGGGTCCACACTGGGGGACAGTTTTAATAAACCGCTACCACGACAACG GCGGCCATTTGGGCGTCGCCACATCGCAGACCCCGACAACGGGCCCGCAGGACACGGTAA CATCTGCACCACCTGACCGCCTCCAAAATGTTTCTCCGTTTCCATATGGTGTCTCGTCAG TGTTTTTAAATTTTTAAATAAACGGGGGGGGGGGGGAGGGCACACAAACAGCAAAGCCCC AGCCAAGTCCCAGGAAGACATTCCAGGCCGAGAGGGGTTCTAGCTACATCGTCTGGCCCC TGACGCCACGGTGCTTTGATGTTCACCTTCACTTCTTCAAGCCCAGAAGCCTCTGGAGGG CCCGGCATCCTGATGGCTGGGTCAACCCCCGTTCAGAGCGCAGGGCTGTGGGCAGGTACA GGGCTGCTCCCCCGAGTGGAGCTGGGGGTCCCCAGGGCCCGCCCACCCCTGCTCTGTGCC AGCTCTGGGCTGCCGAGGAGCCCCAGGGTGCCGGCACCCCAAGCCAGGGCCAGGCGGGGC GAGGAGACCACGAACAAAGGCACAGAGGCTGAGAACTCAGCACGGCCCCAAAGTGCAGGG CCCGGCGGCCGCAGCGGTGGCAGCGGGGAGGGAACCGGCGTGAGCTCAGCGCTGGACGGG CAACTCGGGCTCCATCCTGCAGCCAAGGGAAGCCTCTGCGGTACATCGGGGCCACGGGGA AAGTGGGGTGCAGCGAGGCCCAGACCCAGCCACTCCCCGCGGACGGGAACGCCAGGTGCA CCCCACCCTCCTGGGCCGGGGAGACCGGAGGGCTGGATCCACCCCAGGACCCGCTGGGCG CTCACGGGCCCCTCAGCGGCCACCGCCTCCGCCGCCGCCCCCGCCGCCACCCCCACCCTG GCTCCCAGCGTCTGGTGCTCCCGACATCATGAGGAAGAGGACCACGGGAATGATGTACAT CCAATATTTGGCGAAAAAGGACTTCTGCTCCTGGGGGTTCTTGGCCTTCTGAGCCTGCTC CATTTCCAGACGCTCGATGAAGGCCGCTGTCTCTGGACCTGGGGCGGGGACCGGCGGCTG CAGCTGCACGGAGGTGTTGAACAGCTCCAGGTCCACGTCCTCCACCTCGTGGCCCCGGCA GCCCCCGGGGTGTGTCACCACCGACACACCCACCACGTTGCCGGCCACGTCCACGTGCAG GGTCAGCTGGTCCGAGAGGTGAGACTCCAGCAGGGAGCATGCGGGGACAAAGGAGGAGAC GTAGCCACCGGATTCTGGGCCATCAGGGGCCCCAGGTCGTCGTGGGACCCGGACACGGTA CACGCCGTTCAGCGCTGCCACATCCCGGAGGCGGCCCCGCTCCTCCTCGTTGAGCTGCCG CTGTGACAGAGACAAAGTGCCATCCTGCTGGTTCCAGAGCAATGAGCCTCGCTTCCGGAA GTGGGCGCTGTCATCGATCTCAAATGAGTGCTCCAGCAGCAGCCCCACGGTGCCGCAGCC CTCGCCCTCTCGACTTTCAGCCCCAGCCCCCCGCACAGAGGCCCCGGACCTGCAACCACT ACCCCTCGCCCGGCTGGGGGCTGCTGCAGCCATCACCAAGAGCAGCAGCAGCCGAGTAGC CCCAGCGCGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1058-1176, - strand, RNAz p=0.580906 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1058-1176, - strand, RNAz p=0.580906 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 845-963, gnl|bosTau2|chr18 (49296585-49296467) | |
| 845-963, gnl|Hg17|chr19 (55677336-55677218) | |
| 845-963, gnl|Mm7|chr7 (40665135-40665238) | |
| 1058-1256, gnl|bosTau2|chr18 (49295146-49294947) | |
| 1058-1256, gnl|canFam2|chr1 (109139413-109139213) | |
| 1058-1256, gnl|danRer3|chr3 (24425082-24424888) | |
| 1058-1256, gnl|echTel1|scaffold_59648 (1058-854) | |
| 1058-1256, gnl|fr1|chrUn (267963189-267963393) | |
| 1058-1256, gnl|hg17|chr19 (55675638-55675839) | |
| 1058-1256, gnl|Hg17|chr19 (55675831-55675637) | |
| 1058-1256, gnl|loxAfr1|scaffold_223259 (69-271) | |
| 1058-1256, gnl|mm7|chr7 (40666609-40666407) | |
| 1058-1256, gnl|Mm7|chr7 (40666412-40666611) | |
| 1058-1256, gnl|rheMac2|chr19 (56689007-56689208) | |
| 1058-1256, gnl|rn3|chr1 (95048035-95047832) | |
| 1058-1256, gnl|tetNig1|chr3 (14679051-14678857) | |
| 1058-1256, gnl|xenTro1|scaffold_444 (877326-877121) | |
| 1344-1455, gnl|bosTau2|chr18 (49293663-49293552) | |
| 1344-1455, gnl|canFam2|chr1 (109140859-109140713) | |
| 1344-1455, gnl|danRer3|chr3 (24427100-24426979) | |
| 1344-1455, gnl|dasNov1|scaffold_204859 (3590-3737) | |
| 1344-1455, gnl|fr1|chrUn (267962376-267962513) | |
| 1344-1455, gnl|hg17|chr19 (55674007-55674154) | |
| 1344-1455, gnl|Hg17|chr19 (55674136-55674025) | |
| 1344-1455, gnl|mm7|chr7 (40667588-40667446) | |
| 1344-1455, gnl|Mm7|chr7 (40667457-40667568) | |
| 1344-1455, gnl|panTro1|chr20 (52981133-52981281) | |
| 1344-1455, gnl|rheMac2|chr19 (56687380-56687527) | |
| 1344-1455, gnl|rn3|chr1 (95049097-95048963) | |
| 1344-1455, gnl|xenTro1|scaffold_444 (877883-877757) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 845-963, gnl|bosTau2|chr18 (49296585-49296467) | |
| 845-963, gnl|Hg17|chr19 (55677336-55677218) | |
| 845-963, gnl|Mm7|chr7 (40665135-40665238) | |
| 1058-1256, gnl|bosTau2|chr18 (49295146-49294947) | |
| 1058-1256, gnl|canFam2|chr1 (109139413-109139213) | |
| 1058-1256, gnl|danRer3|chr3 (24425082-24424888) | |
| 1058-1256, gnl|echTel1|scaffold_59648 (1058-854) | |
| 1058-1256, gnl|fr1|chrUn (267963189-267963393) | |
| 1058-1256, gnl|hg17|chr19 (55675638-55675839) | |
| 1058-1256, gnl|Hg17|chr19 (55675831-55675637) | |
| 1058-1256, gnl|loxAfr1|scaffold_223259 (69-271) | |
| 1058-1256, gnl|mm7|chr7 (40666609-40666407) | |
| 1058-1256, gnl|Mm7|chr7 (40666412-40666611) | |
| 1058-1256, gnl|rheMac2|chr19 (56689007-56689208) | |
| 1058-1256, gnl|rn3|chr1 (95048035-95047832) | |
| 1058-1256, gnl|tetNig1|chr3 (14679051-14678857) | |
| 1058-1256, gnl|xenTro1|scaffold_444 (877326-877121) | |
| 1344-1455, gnl|bosTau2|chr18 (49293663-49293552) | |
| 1344-1455, gnl|canFam2|chr1 (109140859-109140713) | |
| 1344-1455, gnl|danRer3|chr3 (24427100-24426979) | |
| 1344-1455, gnl|dasNov1|scaffold_204859 (3590-3737) | |
| 1344-1455, gnl|fr1|chrUn (267962376-267962513) | |
| 1344-1455, gnl|hg17|chr19 (55674007-55674154) | |
| 1344-1455, gnl|Hg17|chr19 (55674136-55674025) | |
| 1344-1455, gnl|mm7|chr7 (40667588-40667446) | |
| 1344-1455, gnl|Mm7|chr7 (40667457-40667568) | |
| 1344-1455, gnl|panTro1|chr20 (52981133-52981281) | |
| 1344-1455, gnl|rheMac2|chr19 (56687380-56687527) | |
| 1344-1455, gnl|rn3|chr1 (95049097-95048963) | |
| 1344-1455, gnl|xenTro1|scaffold_444 (877883-877757) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cov (1.05722) | |
| cly (0.482567) | |
| eje (0.395335) | |
| col (0.390016) | |
| eru (0.360144) | |
| jca (0.34188) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ute (0.265569) | |
| ese (0.253004) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (1.05722) | |
| cly (0.482567) | |
| eje (0.395335) | |
| col (0.390016) | |
| eru (0.360144) | |
| jca (0.34188) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ute (0.265569) | |
| ese (0.253004) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| ebs (0.118301) | |
| nbm (0.0993246) |