Ss1.1-Mixg-0011e09.3
|
AGAGCTCCCGCTGGGCCCGCGATCCTGGCCATTCAGCCACCGCTGCCCCCGCTGCGCGCC
CTCGAGCCTCTGTCTAAGAAGCAAAGCTCTGTTTCTCCAGCCCAGAACAAGATGGCAAAG
GTGGCCAAGGACCTCAACCCAGGAGTTCAGAAGATGTCCCTGGGCCAGCAGCAGTCAGCA
AGAGGTGTGCCTTGTCTGAGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCGTGG
AGGAAAATATGCAAGTCCTGCAAATGCAGCCAAGAGGACCACTTCCTGAGCTCTGACCTG
GAAGATGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCACAGCC
CGGGTGAAAGGCGGGGATGGCATCCGGATTTACAAGAGAAACCGGATGATCATGACCAAC
CCCATTGCCACCGGCAAAGATCCCACCTTTGACACCATCACCTATGAGTGGGCTCCCCCT
GGAGTCACCCAGAAATTGGGCCTGCAGTACATGGAGCTCATTCCCAAGGAGAAGCAGCCC
GTGACAGGCACCGAGGGCGCCTACTATCGCCGGCGCCAGCTCATGCACCAGCTCCCCATC
TATGACCAGGACCCCTCTCGCTGCCGCGGACTTTTGGAGAGTGAGCTGAAGGTGATGGAA
GAGTTCGTGAAGCAGTATAAGAGCGAGGCCCTGGGCGTGGGCGAAGTGGCCCTCCCCGGG
CAGGGCGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAGAAGCCCGAGGGCGCCGAGACC
GCTGCCCCAACCGCCAACGGCAGCCTTGGGGACCCGTCGAAGGAATACGTCTGTGAGCTC
TGCAAGGGGGTGGCCCCTGCCGACAGCCCCGTGGTCTACTCGGACAGAGCAGGTTACAGC
AAGCAGTGGCATCCTGCATGCTTCGTGTGCGCCAAGTGCTCCGAGCCGCTGGTGGACCTC
ATCTACTTCTGGAAGGATGGGGCACCCTGGTGTGGCCGTCACTACTGCGAGAGTCTGCGG
CCCCGGTGCTCCGGCTGTGACGAGATAATATTCTCAGAGGACTACCAGCGAGTGGAGGAC
CTGGCCTGGCACCGAAAGCACTTTGTCTGCGAGGGCTGCGAGCAGCAGCTGGGCGGCCGG
GCATACATCATCACCAAGGGTCAGCTTCTGTGCCCGACGTGCAGCAAGTCCAAACGCACC
TGAAGGGCCATCTGCCCACAGCCAGCATCCACAGGATCCCACCAAGAAGGAGAGCCAAGT
GTGCTAAGGCCATCCTGAGGGTTTGGCGAGACAGCCAGCAAGCAACAAAAAGAGTCATCT
TTTTTCCGAGGGAATATATATACTCATATATTGTAGGTTGGGTGGTGGCGGAACCTGAGC
GCCAATAGTTTCAAAGACAGAAATGTTCTGAGAAGTCTTAGGATGAAGTTCTTTTGTTTT
TGTTGTTGTTGTTGTTGTTTTCCAGTGGCCAACGAAAGACACAGCTGATATCTTGCCCAG
GGTTTTTTGGAGGAGTCTCCCAGAATGCAACTCTGAGTGATCCAACCATGTAGCTGTAGA
ATGGGCATGCTTTCTCGAGATCACCAGGGCTCCTCCAGGAGCAGCCTGGGATCCCAAGAG
TCCTTTGTTGCCTCTTTTTCAAATGGAGTTTGAATTTGAAATTTAAAAAACTTGGCATGA
TAAACATATCAATAAAAGTTTTATAAAGTTCCAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAGCTCCCGCTGGGCCCGCGATCCTGGCCATTCAGCCACCGCTGCCCCCGCTGCGCGCC
CTCGAGCCTCTGTCTAAGAAGCAAAGCTCTGTTTCTCCAGCCCAGAACAAGATGGCAAAG
GTGGCCAAGGACCTCAACCCAGGAGTTCAGAAGATGTCCCTGGGCCAGCAGCAGTCAGCA
AGAGGTGTGCCTTGTCTGAGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCGTGG
AGGAAAATATGCAAGTCCTGCAAATGCAGCCAAGAGGACCACTTCCTGAGCTCTGACCTG
GAAGATGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCACAGCC
CGGGTGAAAGGCGGGGATGGCATCCGGATTTACAAGAGAAACCGGATGATCATGACCAAC
CCCATTGCCACCGGCAAAGATCCCACCTTTGACACCATCACCTATGAGTGGGCTCCCCCT
GGAGTCACCCAGAAATTGGGCCTGCAGTACATGGAGCTCATTCCCAAGGAGAAGCAGCCC
GTGACAGGCACCGAGGGCGCCTACTATCGCCGGCGCCAGCTCATGCACCAGCTCCCCATC
TATGACCAGGACCCCTCTCGCTGCCGCGGACTTTTGGAGAGTGAGCTGAAGGTGATGGAA
GAGTTCGTGAAGCAGTATAAGAGCGAGGCCCTGGGCGTGGGCGAAGTGGCCCTCCCCGGG
CAGGGCGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAGAAGCCCGAGGGCGCCGAGACC
GCTGCCCCAACCGCCAACGGCAGCCTTGGGGACCCGTCGAAGGAATACGTCTGTGAGCTC
TGCAAGGGGGTGGCCCCTGCCGACAGCCCCGTGGTCTACTCGGACAGAGCAGGTTACAGC
AAGCAGTGGCATCCTGCATGCTTCGTGTGCGCCAAGTGCTCCGAGCCGCTGGTGGACCTC
ATCTACTTCTGGAAGGATGGGGCACCCTGGTGTGGCCGTCACTACTGCGAGAGTCTGCGG
CCCCGGTGCTCCGGCTGTGACGAGATAATATTCTCAGAGGACTACCAGCGAGTGGAGGAC
CTGGCCTGGCACCGAAAGCACTTTGTCTGCGAGGGCTGCGAGCAGCAGCTGGGCGGCCGG
GCATACATCATCACCAAGGGTCAGCTTCTGTGCCCGACGTGCAGCAAGTCCAAACGCACC
TGAAGGGCCATCTGCCCACAGCCAGCATCCACAGGATCCCACCAAGAAGGAGAGCCAAGT
GTGCTAAGGCCATCCTGAGGGTTTGGCGAGACAGCCAGCAAGCAACAAAAAGAGTCATCT
TTTTTCCGAGGGAATATATATACTCATATATTGTAGGTTGGGTGGTGGCGGAACCTGAGC
GCCAATAGTTTCAAAGACAGAAATGTTCTGAGAAGTCTTAGGATGAAGTTCTTTTGTTTT
TGTTGTTGTTGTTGTTGTTTTCCAGTGGCCAACGAAAGACACAGCTGATATCTTGCCCAG
GGTTTTTTGGAGGAGTCTCCCAGAATGCAACTCTGAGTGATCCAACCATGTAGCTGTAGA
ATGGGCATGCTTTCTCGAGATCACCAGGGCTCCTCCAGGAGCAGCCTGGGATCCCAAGAG
TCCTTTGTTGCCTCTTTTTCAAATGGAGTTTGAATTTGAAATTTAAAAAACTTGGCATGA
TAAACATATCAATAAAAGTTTTATAAAGTTCCAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-156, gnl|bosTau2|chr22 (7817731-7817880) |
|
1-156, gnl|canFam2|chr20 (12585631-12585264) |
|
1-156, gnl|dasNov1|scaffold_213549 (433-769) |
|
1-156, gnl|echTel1|scaffold_320463 (83700-83375) |
|
1-156, gnl|hg17|chr3 (8518284-8518614) |
|
1-156, gnl|Hg17|chr3 (8518513-8518669) |
|
1-156, gnl|loxAfr1|scaffold_13600 (284-611) |
|
1-156, gnl|mm7|chr6 (112433753-112434092) |
|
1-156, gnl|Mm7|chr6 (112433978-112434143) |
|
1-156, gnl|monDom2|scaffold_5 (35125485-35125848) |
|
1-156, gnl|oryCun1|scaffold_212360 (29904-29679) |
|
1-156, gnl|rn3|chr4 (148316037-148316373) |
| |
|
498-830, gnl|bosTau2|chr22 (7858302-7858634) |
|
498-830, gnl|Hg17|chr3 (8565253-8565591) |
|
498-830, gnl|Mm7|chr6 (112476784-112477122) |
| |
|
1043-1711, gnl|bosTau2|chr22 (7873892-7874542) |
|
1043-1711, gnl|Hg17|chr3 (8584124-8584805) |
|
1043-1711, gnl|Mm7|chr6 (112491016-112491626) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-156, gnl|bosTau2|chr22 (7817731-7817880) |
|
1-156, gnl|canFam2|chr20 (12585631-12585264) |
|
1-156, gnl|dasNov1|scaffold_213549 (433-769) |
|
1-156, gnl|echTel1|scaffold_320463 (83700-83375) |
|
1-156, gnl|hg17|chr3 (8518284-8518614) |
|
1-156, gnl|Hg17|chr3 (8518513-8518669) |
|
1-156, gnl|loxAfr1|scaffold_13600 (284-611) |
|
1-156, gnl|mm7|chr6 (112433753-112434092) |
|
1-156, gnl|Mm7|chr6 (112433978-112434143) |
|
1-156, gnl|monDom2|scaffold_5 (35125485-35125848) |
|
1-156, gnl|oryCun1|scaffold_212360 (29904-29679) |
|
1-156, gnl|rn3|chr4 (148316037-148316373) |
| |
|
498-830, gnl|bosTau2|chr22 (7858302-7858634) |
|
498-830, gnl|Hg17|chr3 (8565253-8565591) |
|
498-830, gnl|Mm7|chr6 (112476784-112477122) |
| |
|
1043-1711, gnl|bosTau2|chr22 (7873892-7874542) |
|
1043-1711, gnl|Hg17|chr3 (8584124-8584805) |
|
1043-1711, gnl|Mm7|chr6 (112491016-112491626) |
|
bla (0.87043) |
|
ssp (0.813118) |
|
isp (0.451128) |
|
cst (0.420109) |
|
pla (0.401016) |
|
aor (0.390549) |
|
vin (0.332557) |
|
ldo (0.291008) |
|
ste (0.270416) |
|
nms (0.213858) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ski (0.146735) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
tra (0.123092) |
|
cly (0.120642) |
|
bla (0.87043) |
|
ssp (0.813118) |
|
isp (0.451128) |
|
cst (0.420109) |
|
pla (0.401016) |
|
aor (0.390549) |
|
vin (0.332557) |
|
ldo (0.291008) |
|
ste (0.270416) |
|
nms (0.213858) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ski (0.146735) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
tra (0.123092) |
|
cly (0.120642) |
