Ss1.1-Mixg-0011h08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTCACAGGAAGTTTTATTGGAAACAAA CCAGCTGCAGCAAAGTGACACTCAGTGCACGCTGCCCAGTGGGCGAGGTGGGGCTACAAG TGGACGGCTGACCCCGAGGAACCAACTGCTGGGTGGTCTCCGGCCCTTGAGGCTGGAGTG TGCAGGCCTCAGCCTGAGGGGCACAAAATACAAAAATAAACTCTGTGGTCCAGCTGTCCT GCCTGTGTCAGTTCATCTGGGCAGGGCAGTGGCTCTTCCCACCAGGCCCTGTGCTGTCCA GTCCAGCCACAGCGTGGGCAGCAGGAGCCTGTGGGGGTGAGTGGATATCCACAGGCTAAG CCAAAGGGCTAGGCAGGCGTGGCCTTGGGTGGCGCTGGTGCTGTGGCAGCGCCCGGATCT CCTGGCCAGCGGCTGTGGAGGCCCTGAGGCCCCTCGGGTGGGCAGGTCCAGGCACGGTCT GAAGCTGAGTGACGCTGGGGCCTCTGTTCCTCCTCTTCACACACAGACCACGGGGACCCT GTCCTCCATGGTGCTGGTCTCCTCGGGGCCGCCCTCGCTGCCTCCACCGCCGCTCTCCTC CTCCTCCTCCTCCTCCTCCTCCCCGAGCTCCATGTCCAGCTCATTGCCGGCCTCCGAGGG GGTGTAGGTGGACCCACTGATAGAGCGGCAGCTGAAGAAAACAATGCGTTTCAGCCGCTT GTTGTAGAAGAAGTAGTTGAAGGACCAGAGGCTGCCGTCTTCCCCGAAGGGATCTGAGTC TAAGTCTGGGTTGTAGCTGTAGATGTCGCACTCGGCCAAGCAGATCTCCTCATCCACGGC GTTCCACAGCTGTGGCTTCAGGGCCCTGAAGTCCTCCCGCACGGCGGAGAACAGGCTGCA GTTGACCGCGTTCACCACCCAGCTGAGGCTGGGCTCCCTGCTGAACTCGTGGCTCCGGGC GGCGCTGAAGTCGTAGTCTGGCCGGAAAGACTCATTGAGCGTGGTGATCAGGTAGAAGAG GGTCTTGCGGCTGCATTTGTCACTGAGGGGGCTCTCATCCTCGCCACCCTGGCTCTTGCT CAGTCTGCTGGGGCTGAGGCCCGAGGTCTGGGGTGGGGACAGGGCCTCCAGCACGTGCGG CTGGCCCTCCTGGCAGAACTGCTTGAACATGTGCTTGTCGTCTCCCGCCATCTTACAGGA GTAGCTCTCGATCCTGCCAATGATGTGGGCATCTCCCGTCTCCACGGTCAGCTGCGAGTT GATGGCCTCGAAGCTGGAGTTCTCCAACAGCTTCATGTCCTTGGGGCGGAGGGTCCTGTG CTTCGGGGGGCTCGTGCTGCCTGCTTGCGCTGCGCTCAATCCGGTTGGGCCGGGTCGGAC CGGGCCAGACAGGGCAGGTCGATAGGCGTCGGTGCGGGTGAGAAGGCGGTGCGGGCCCCG GACAGCGCGAGCTCCTCAGGACCGGAGGGCGGCGCCGCGGCCTCCTCTCGGGCCGCACTG TATCCGGGGGAAGAAGCTCCGCGGCGACGTCCCGTTACTCCCGGCCCTGCCGGCCCATCC GGGCTGCCACCGCGACATAGCCACGCCCCTGTACGGCGCCCGACTATCGCGACCGACCTG CCCGCCGACCGCCACAGAAGGCCTGAGCAGGCGAGCGAACGACCTCTGCCTCCCCGGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTCACAGGAAGTTTTATTGGAAACAAA CCAGCTGCAGCAAAGTGACACTCAGTGCACGCTGCCCAGTGGGCGAGGTGGGGCTACAAG TGGACGGCTGACCCCGAGGAACCAACTGCTGGGTGGTCTCCGGCCCTTGAGGCTGGAGTG TGCAGGCCTCAGCCTGAGGGGCACAAAATACAAAAATAAACTCTGTGGTCCAGCTGTCCT GCCTGTGTCAGTTCATCTGGGCAGGGCAGTGGCTCTTCCCACCAGGCCCTGTGCTGTCCA GTCCAGCCACAGCGTGGGCAGCAGGAGCCTGTGGGGGTGAGTGGATATCCACAGGCTAAG CCAAAGGGCTAGGCAGGCGTGGCCTTGGGTGGCGCTGGTGCTGTGGCAGCGCCCGGATCT CCTGGCCAGCGGCTGTGGAGGCCCTGAGGCCCCTCGGGTGGGCAGGTCCAGGCACGGTCT GAAGCTGAGTGACGCTGGGGCCTCTGTTCCTCCTCTTCACACACAGACCACGGGGACCCT GTCCTCCATGGTGCTGGTCTCCTCGGGGCCGCCCTCGCTGCCTCCACCGCCGCTCTCCTC CTCCTCCTCCTCCTCCTCCTCCCCGAGCTCCATGTCCAGCTCATTGCCGGCCTCCGAGGG GGTGTAGGTGGACCCACTGATAGAGCGGCAGCTGAAGAAAACAATGCGTTTCAGCCGCTT GTTGTAGAAGAAGTAGTTGAAGGACCAGAGGCTGCCGTCTTCCCCGAAGGGATCTGAGTC TAAGTCTGGGTTGTAGCTGTAGATGTCGCACTCGGCCAAGCAGATCTCCTCATCCACGGC GTTCCACAGCTGTGGCTTCAGGGCCCTGAAGTCCTCCCGCACGGCGGAGAACAGGCTGCA GTTGACCGCGTTCACCACCCAGCTGAGGCTGGGCTCCCTGCTGAACTCGTGGCTCCGGGC GGCGCTGAAGTCGTAGTCTGGCCGGAAAGACTCATTGAGCGTGGTGATCAGGTAGAAGAG GGTCTTGCGGCTGCATTTGTCACTGAGGGGGCTCTCATCCTCGCCACCCTGGCTCTTGCT CAGTCTGCTGGGGCTGAGGCCCGAGGTCTGGGGTGGGGACAGGGCCTCCAGCACGTGCGG CTGGCCCTCCTGGCAGAACTGCTTGAACATGTGCTTGTCGTCTCCCGCCATCTTACAGGA GTAGCTCTCGATCCTGCCAATGATGTGGGCATCTCCCGTCTCCACGGTCAGCTGCGAGTT GATGGCCTCGAAGCTGGAGTTCTCCAACAGCTTCATGTCCTTGGGGCGGAGGGTCCTGTG CTTCGGGGGGCTCGTGCTGCCTGCTTGCGCTGCGCTCAATCCGGTTGGGCCGGGTCGGAC CGGGCCAGACAGGGCAGGTCGATAGGCGTCGGTGCGGGTGAGAAGGCGGTGCGGGCCCCG GACAGCGCGAGCTCCTCAGGACCGGAGGGCGGCGCCGCGGCCTCCTCTCGGGCCGCACTG TATCCGGGGGAAGAAGCTCCGCGGCGACGTCCCGTTACTCCCGGCCCTGCCGGCCCATCC GGGCTGCCACCGCGACATAGCCACGCCCCTGTACGGCGCCCGACTATCGCGACCGACCTG CCCGCCGACCGCCACAGAAGGCCTGAGCAGGCGAGCGAACGACCTCTGCCTCCCCGGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 144-452, - strand, RNAz p=0.990305 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 144-452, - strand, RNAz p=0.990305 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_032272, - |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 31-452, gnl|bosTau2|chr14 (132320-132736) | |
| 31-452, gnl|Hg17|chr8 (145234502-145234042) | |
| 31-452, gnl|Mm7|chr15 (76436926-76436463) | |
| 677-799, gnl|bosTau2|chr14 (133226-133348) | |
| 677-799, gnl|canFam2|chr13 (40631219-40631361) | |
| 677-799, gnl|canFam2|chr13 (40631144-40631345) | |
| 677-799, gnl|danRer3|chrNA (152051838-152051973) | |
| 677-799, gnl|danRer3|chrNA (152051845-152051964) | |
| 677-799, gnl|dasNov1|scaffold_55310 (13693-13575) | |
| 677-799, gnl|dasNov1|scaffold_55310 (13691-13575) | |
| 677-799, gnl|fr1|chrUn (216223513-216223645) | |
| 677-799, gnl|fr1|chrUn (216223520-216223639) | |
| 677-799, gnl|hg17|chr3 (134692834-134692953) | |
| 677-799, gnl|hg17|chr8 (145233440-145233582) | |
| 677-799, gnl|Hg17|chr8 (145233565-145233443) | |
| 677-799, gnl|mm7|chr15 (76435888-76436031) | |
| 677-799, gnl|mm7|chr15 (76435814-76436014) | |
| 677-799, gnl|Mm7|chr15 (76436013-76435891) | |
| 677-799, gnl|monDom2|scaffold_79 (2394430-2394562) | |
| 677-799, gnl|monDom2|scaffold_79 (2394434-2394555) | |
| 677-799, gnl|oryCun1|scaffold_185336 (3544-3681) | |
| 677-799, gnl|oryCun1|scaffold_185336 (3475-3670) | |
| 677-799, gnl|panTro1|chr2 (136834005-136834121) | |
| 677-799, gnl|panTro1|chr7 (148541424-148541566) | |
| 677-799, gnl|rheMac2|chr2 (154241743-154241628) | |
| 677-799, gnl|rheMac2|chr8 (146720944-146721086) | |
| 677-799, gnl|rn3|chr7 (114438529-114438671) | |
| 677-799, gnl|rn3|chr7 (114438456-114438655) | |
| 677-799, gnl|tetNig1|chr6 (4324361-4324493) | |
| 677-799, gnl|tetNig1|chr6 (4324368-4324487) | |
| 677-799, gnl|xenTro1|scaffold_4146 (9574-9440) | |
| 916-1088, gnl|bosTau2|chr14 (133684-133856) | |
| 916-1088, gnl|canFam2|chr13 (40630722-40630888) | |
| 916-1088, gnl|danRer3|chrNA (152049892-152050055) | |
| 916-1088, gnl|dasNov1|scaffold_55310 (13974-13810) | |
| 916-1088, gnl|fr1|chrUn (216223047-216223210) | |
| 916-1088, gnl|hg17|chr3 (134692546-134692714) | |
| 916-1088, gnl|Hg17|chr8 (145233135-145232963) | |
| 916-1088, gnl|mm7|chr15 (76435402-76435562) | |
| 916-1088, gnl|Mm7|chr15 (76435568-76435396) | |
| 916-1088, gnl|monDom2|scaffold_79 (2392539-2392705) | |
| 916-1088, gnl|oryCun1|scaffold_185336 (3098-3264) | |
| 916-1088, gnl|panTro1|chr2 (136833717-136833885) | |
| 916-1088, gnl|rheMac2|chr2 (154242027-154241861) | |
| 916-1088, gnl|rn3|chr7 (114438045-114438211) | |
| 916-1088, gnl|tetNig1|chr6 (4323894-4324057) | |
| 1337-1680, gnl|bosTau2|chr14 (135000-135334) | |
| 1337-1680, gnl|Hg17|chr8 (145231753-145231397) | |
| 1337-1680, gnl|Mm7|chr15 (76434216-76433892) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-452, gnl|bosTau2|chr14 (132320-132736) | |
| 31-452, gnl|Hg17|chr8 (145234502-145234042) | |
| 31-452, gnl|Mm7|chr15 (76436926-76436463) | |
| 677-799, gnl|bosTau2|chr14 (133226-133348) | |
| 677-799, gnl|canFam2|chr13 (40631219-40631361) | |
| 677-799, gnl|canFam2|chr13 (40631144-40631345) | |
| 677-799, gnl|danRer3|chrNA (152051838-152051973) | |
| 677-799, gnl|danRer3|chrNA (152051845-152051964) | |
| 677-799, gnl|dasNov1|scaffold_55310 (13693-13575) | |
| 677-799, gnl|dasNov1|scaffold_55310 (13691-13575) | |
| 677-799, gnl|fr1|chrUn (216223513-216223645) | |
| 677-799, gnl|fr1|chrUn (216223520-216223639) | |
| 677-799, gnl|hg17|chr3 (134692834-134692953) | |
| 677-799, gnl|hg17|chr8 (145233440-145233582) | |
| 677-799, gnl|Hg17|chr8 (145233565-145233443) | |
| 677-799, gnl|mm7|chr15 (76435888-76436031) | |
| 677-799, gnl|mm7|chr15 (76435814-76436014) | |
| 677-799, gnl|Mm7|chr15 (76436013-76435891) | |
| 677-799, gnl|monDom2|scaffold_79 (2394430-2394562) | |
| 677-799, gnl|monDom2|scaffold_79 (2394434-2394555) | |
| 677-799, gnl|oryCun1|scaffold_185336 (3544-3681) | |
| 677-799, gnl|oryCun1|scaffold_185336 (3475-3670) | |
| 677-799, gnl|panTro1|chr2 (136834005-136834121) | |
| 677-799, gnl|panTro1|chr7 (148541424-148541566) | |
| 677-799, gnl|rheMac2|chr2 (154241743-154241628) | |
| 677-799, gnl|rheMac2|chr8 (146720944-146721086) | |
| 677-799, gnl|rn3|chr7 (114438529-114438671) | |
| 677-799, gnl|rn3|chr7 (114438456-114438655) | |
| 677-799, gnl|tetNig1|chr6 (4324361-4324493) | |
| 677-799, gnl|tetNig1|chr6 (4324368-4324487) | |
| 677-799, gnl|xenTro1|scaffold_4146 (9574-9440) | |
| 916-1088, gnl|bosTau2|chr14 (133684-133856) | |
| 916-1088, gnl|canFam2|chr13 (40630722-40630888) | |
| 916-1088, gnl|danRer3|chrNA (152049892-152050055) | |
| 916-1088, gnl|dasNov1|scaffold_55310 (13974-13810) | |
| 916-1088, gnl|fr1|chrUn (216223047-216223210) | |
| 916-1088, gnl|hg17|chr3 (134692546-134692714) | |
| 916-1088, gnl|Hg17|chr8 (145233135-145232963) | |
| 916-1088, gnl|mm7|chr15 (76435402-76435562) | |
| 916-1088, gnl|Mm7|chr15 (76435568-76435396) | |
| 916-1088, gnl|monDom2|scaffold_79 (2392539-2392705) | |
| 916-1088, gnl|oryCun1|scaffold_185336 (3098-3264) | |
| 916-1088, gnl|panTro1|chr2 (136833717-136833885) | |
| 916-1088, gnl|rheMac2|chr2 (154242027-154241861) | |
| 916-1088, gnl|rn3|chr7 (114438045-114438211) | |
| 916-1088, gnl|tetNig1|chr6 (4323894-4324057) | |
| 1337-1680, gnl|bosTau2|chr14 (135000-135334) | |
| 1337-1680, gnl|Hg17|chr8 (145231753-145231397) | |
| 1337-1680, gnl|Mm7|chr15 (76434216-76433892) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| eye (0.511509) | |
| cut (0.339847) | |
| pla (0.267344) | |
| med (0.232504) | |
| jca (0.22792) | |
| nms (0.213858) | |
| fli (0.202881) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.511509) | |
| cut (0.339847) | |
| pla (0.267344) | |
| med (0.232504) | |
| jca (0.22792) | |
| nms (0.213858) | |
| fli (0.202881) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |