Ss1.1-Mixn-0001a05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTTTGTGGCCTAGAGGTGATAGCACCTCTGGACTAGTCTGGAGGCGAGAGTGGGAAG GGCCTTCCTTTGCCCCGGCACGGGTCAGCCGCCTCCTCCGGGGTCTCCTGCGACTCAGCG GGAAGCGGAGAGCTAACTAGGAAGATTTCTGGGTCTTTTGCTGGCCAGGGGCCTTCTCAG AGCCTCCAGCCATGCGGCTGTCTGCCCTGCTGGCCTTGGCATCCAAGGTCACCCTGCCTC CCAACTACCGCTATGGGATGAGCCGCCCAGGCTCCTTGTCAGACAAAAGGAAGAACCCTC CAGGGACCAGGCGGCGCCGGGTGCCTGTGGAACCCATCTCTGATGAAGACTGGCATCTGT TCTGTGGGGACAAGGTGGAGATCCTTGAAGGCAAGGACGCCGGGAAGCAAGGCAAAGTAG TTCAAGTTATCCGGCAGCGAAACTGGGTCGTTGTGGAGGGACTGAATACACATTACCGCT ATGTTGGCAAGACGGTGGATTACCGGGGCACCATGATCCCCAGCGAAGCACCCCTGCTCC ACAACCAGGTCAAACTTGTGGATCCCACAGACAGGAAACCCACTGATGTGGAGTGGAGAT TCACTGAGGCAGGAGAGCGGGTACGAGTCTCCACAAGATCAGGAAGAATCATCCCTAAAC CTGAATTTCCCAGAGCTGACGGCATCGTCCCTGAAACATGGATTGATGGCCCCAAAGATA CCTCAGTGGAAGATGCTCTAGAAAAAACCTATGTGCCCCGGCTAAAGACACTGGAGGAGG AGGTGATGGAGGCGATGGGGATCCAGGAGACTCGGAGACACAAGAAAGTCTATTGGTATT GAGTCTGGGCAGAGCCACTGCTCCCCTCTTTGTCTTAGCCTTGAAGCTTGGGGCCACCTC TTCTTCAGATGCTAATAAAGAGCCTTGGGTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAA TAGACTGGCATCCCTGACCCCGATGCACCTGCTTCCGGGACTGAGGGAGGGAGCATCTGT CCTGATGTTATGACAAAACCTGGAGAGCAGTTAGCCAGCCTTAAGGTAGCCCTGCCAAAG GGCAGGGCCGGCAGTTTCTGGCATGGGGATCTAAGGGAGAGAGCCTCCCTCCGTGGAGAT CTCTGAGTCACAGCGTGCTGCTTATTAGGGAAGACAGTGGGGCTGGGGTGTGAGACCTGA TAGAGCACTTCTTCAGGGTGCAGTACAGAGGGTGCGTGTCTATCCTTGTCTAAACTTAAT AGAAATCATAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTTTGTGGCCTAGAGGTGATAGCACCTCTGGACTAGTCTGGAGGCGAGAGTGGGAAG GGCCTTCCTTTGCCCCGGCACGGGTCAGCCGCCTCCTCCGGGGTCTCCTGCGACTCAGCG GGAAGCGGAGAGCTAACTAGGAAGATTTCTGGGTCTTTTGCTGGCCAGGGGCCTTCTCAG AGCCTCCAGCCATGCGGCTGTCTGCCCTGCTGGCCTTGGCATCCAAGGTCACCCTGCCTC CCAACTACCGCTATGGGATGAGCCGCCCAGGCTCCTTGTCAGACAAAAGGAAGAACCCTC CAGGGACCAGGCGGCGCCGGGTGCCTGTGGAACCCATCTCTGATGAAGACTGGCATCTGT TCTGTGGGGACAAGGTGGAGATCCTTGAAGGCAAGGACGCCGGGAAGCAAGGCAAAGTAG TTCAAGTTATCCGGCAGCGAAACTGGGTCGTTGTGGAGGGACTGAATACACATTACCGCT ATGTTGGCAAGACGGTGGATTACCGGGGCACCATGATCCCCAGCGAAGCACCCCTGCTCC ACAACCAGGTCAAACTTGTGGATCCCACAGACAGGAAACCCACTGATGTGGAGTGGAGAT TCACTGAGGCAGGAGAGCGGGTACGAGTCTCCACAAGATCAGGAAGAATCATCCCTAAAC CTGAATTTCCCAGAGCTGACGGCATCGTCCCTGAAACATGGATTGATGGCCCCAAAGATA CCTCAGTGGAAGATGCTCTAGAAAAAACCTATGTGCCCCGGCTAAAGACACTGGAGGAGG AGGTGATGGAGGCGATGGGGATCCAGGAGACTCGGAGACACAAGAAAGTCTATTGGTATT GAGTCTGGGCAGAGCCACTGCTCCCCTCTTTGTCTTAGCCTTGAAGCTTGGGGCCACCTC TTCTTCAGATGCTAATAAAGAGCCTTGGGTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAA TAGACTGGCATCCCTGACCCCGATGCACCTGCTTCCGGGACTGAGGGAGGGAGCATCTGT CCTGATGTTATGACAAAACCTGGAGAGCAGTTAGCCAGCCTTAAGGTAGCCCTGCCAAAG GGCAGGGCCGGCAGTTTCTGGCATGGGGATCTAAGGGAGAGAGCCTCCCTCCGTGGAGAT CTCTGAGTCACAGCGTGCTGCTTATTAGGGAAGACAGTGGGGCTGGGGTGTGAGACCTGA TAGAGCACTTCTTCAGGGTGCAGTACAGAGGGTGCGTGTCTATCCTTGTCTAAACTTAAT AGAAATCATAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 129-362, + strand, RNAz p=0.784946 | |
| 169-288, - strand, RNAz p=0.558237 | |
| 1062-1165, + strand, RNAz p=0.997634 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 129-362, + strand, RNAz p=0.784946 | |
| 169-288, - strand, RNAz p=0.558237 | |
| 1062-1165, + strand, RNAz p=0.997634 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 129-377, gnl|bosTau2|chr3 (11078647-11078399) | |
| 129-377, gnl|canFam2|chr7 (44219293-44219065) | |
| 129-377, gnl|danRer3|chr19 (2140918-2140687) | |
| 129-377, gnl|echTel1|scaffold_311785 (53447-53227) | |
| 129-377, gnl|fr1|chrUn (220593190-220592992) | |
| 129-377, gnl|hg17|chr1 (153521372-153521601) | |
| 129-377, gnl|Hg17|chr1 (153521631-153521384) | |
| 129-377, gnl|loxAfr1|scaffold_17986 (37643-37862) | |
| 129-377, gnl|mm7|chr3 (88035864-88035643) | |
| 129-377, gnl|Mm7|chr3 (88035615-88035852) | |
| 129-377, gnl|monDom2|scaffold_59 (614544-614332) | |
| 129-377, gnl|oryCun1|scaffold_178525 (54044-54271) | |
| 129-377, gnl|panTro1|chr1 (135485639-135485868) | |
| 129-377, gnl|rheMac2|chr1 (135347385-135347614) | |
| 129-377, gnl|rn3|chr2 (179949840-179949619) | |
| 129-377, gnl|tetNig1|chr21_random (1852009-1852193) | |
| 129-377, gnl|xenTro1|scaffold_477 (428545-428797) | |
| 573-708, gnl|bosTau2|chr3 (11077656-11077521) | |
| 573-708, gnl|Hg17|chr1 (153520643-153520508) | |
| 573-708, gnl|Mm7|chr3 (88036734-88036869) | |
| 796-934, gnl|bosTau2|chr17 (30577293-30577421) | |
| 796-934, gnl|Hg17|chr1 (153520309-153520182) | |
| 796-934, gnl|Mm7|chr3 (88037101-88037231) | |
| 988-1272, gnl|bosTau2|chr3 (11077174-11076892) | |
| 988-1272, gnl|Hg17|chr1 (153520124-153519821) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-377, gnl|bosTau2|chr3 (11078647-11078399) | |
| 129-377, gnl|canFam2|chr7 (44219293-44219065) | |
| 129-377, gnl|danRer3|chr19 (2140918-2140687) | |
| 129-377, gnl|echTel1|scaffold_311785 (53447-53227) | |
| 129-377, gnl|fr1|chrUn (220593190-220592992) | |
| 129-377, gnl|hg17|chr1 (153521372-153521601) | |
| 129-377, gnl|Hg17|chr1 (153521631-153521384) | |
| 129-377, gnl|loxAfr1|scaffold_17986 (37643-37862) | |
| 129-377, gnl|mm7|chr3 (88035864-88035643) | |
| 129-377, gnl|Mm7|chr3 (88035615-88035852) | |
| 129-377, gnl|monDom2|scaffold_59 (614544-614332) | |
| 129-377, gnl|oryCun1|scaffold_178525 (54044-54271) | |
| 129-377, gnl|panTro1|chr1 (135485639-135485868) | |
| 129-377, gnl|rheMac2|chr1 (135347385-135347614) | |
| 129-377, gnl|rn3|chr2 (179949840-179949619) | |
| 129-377, gnl|tetNig1|chr21_random (1852009-1852193) | |
| 129-377, gnl|xenTro1|scaffold_477 (428545-428797) | |
| 573-708, gnl|bosTau2|chr3 (11077656-11077521) | |
| 573-708, gnl|Hg17|chr1 (153520643-153520508) | |
| 573-708, gnl|Mm7|chr3 (88036734-88036869) | |
| 796-934, gnl|bosTau2|chr17 (30577293-30577421) | |
| 796-934, gnl|Hg17|chr1 (153520309-153520182) | |
| 796-934, gnl|Mm7|chr3 (88037101-88037231) | |
| 988-1272, gnl|bosTau2|chr3 (11077174-11076892) | |
| 988-1272, gnl|Hg17|chr1 (153520124-153519821) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cbr (4.60712) | |
| duo (0.518403) | |
| lnt (0.284616) | |
| cov (0.264306) | |
| med (0.232504) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| che (0.136314) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (4.60712) | |
| duo (0.518403) | |
| lnt (0.284616) | |
| cov (0.264306) | |
| med (0.232504) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| che (0.136314) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |