Non-Coding RNA Search

Ss1.1-Mixn-0001b10.5

Sequence:


               
               GGGCCGATGGGGCCACAGCGGAAGGGAGGGAGAGAGAGGGCAGCTGCCTCTCCTGCTCTC
TAGACCCGCCTCTGCCTCGTGGCTCTCCAGAGGCGCCCATCGCCCATCTCCGAGCCTCCT
CTGACCTCTGTCGTACTCTCTCCTACCATTTTACCAACGTACCTCAGTCTCCAGCAGACC
CCCCCATACCTACAGTCCGGGGCGGGTCTGTTCTGCCAATGCCCACCTCCTACCCCGTCC
ACGTCCACCTGGGTCTCCTTGAGCCACAGCTAGCTGCCAACCGGGTCTCCAAACACCCTC
CAGTGCCTGGCTCAAGAGAGACCAGGCCCGGTCCGAGCTTCCTCTTGCCGCGGTGGACCA
GACCCGTGGCCAGAGGCTGGGCACCCCCGGGTAGCAATCCCACAATGCACTGTACCTCAG
AGAGAGCGCTTCCCACGGGGCAGCACGGGCGCCGCCCTCCGTGCCAGGAGGCCGGCCGCT
CACCACACTGCTCGCAAAAGACAAGGGCCAGGCTGCCCTCGGGGCACCCTCAGTCTTCAC
TTTTGTCTCTCCGGAAGAGCCAGCAGTCTGATTCCGTCTTTTTCAGCCCCGTCTCTCTCC
TTCTCTCCACCCCCACGCTGCTGAACCGTTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCGATGGGGCCACAGCGGAAGGGAGGGAGAGAGAGGGCAGCTGCCTCTCCTGCTCTC
TAGACCCGCCTCTGCCTCGTGGCTCTCCAGAGGCGCCCATCGCCCATCTCCGAGCCTCCT
CTGACCTCTGTCGTACTCTCTCCTACCATTTTACCAACGTACCTCAGTCTCCAGCAGACC
CCCCCATACCTACAGTCCGGGGCGGGTCTGTTCTGCCAATGCCCACCTCCTACCCCGTCC
ACGTCCACCTGGGTCTCCTTGAGCCACAGCTAGCTGCCAACCGGGTCTCCAAACACCCTC
CAGTGCCTGGCTCAAGAGAGACCAGGCCCGGTCCGAGCTTCCTCTTGCCGCGGTGGACCA
GACCCGTGGCCAGAGGCTGGGCACCCCCGGGTAGCAATCCCACAATGCACTGTACCTCAG
AGAGAGCGCTTCCCACGGGGCAGCACGGGCGCCGCCCTCCGTGCCAGGAGGCCGGCCGCT
CACCACACTGCTCGCAAAAGACAAGGGCCAGGCTGCCCTCGGGGCACCCTCAGTCTTCAC
TTTTGTCTCTCCGGAAGAGCCAGCAGTCTGATTCCGTCTTTTTCAGCCCCGTCTCTCTCC
TTCTCTCCACCCCCACGCTGCTGAACCGTTTCATTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               158-385, - strand, RNAz p=0.999785
               

               
               222-346, - strand, RNAz p=0.998137
               

               
               421-609, - strand, RNAz p=0.863398

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-385, - strand, RNAz p=0.999785
               

               
               222-346, - strand, RNAz p=0.998137
               

               
               421-609, - strand, RNAz p=0.863398

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               262-333, + strand, RNAmicro p=0.999752
               

               
               180-274, - strand, RNAmicro p=0.92548

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               262-333, + strand, RNAmicro p=0.999752
               

               
               180-274, - strand, RNAmicro p=0.92548

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-636, gnl|bosTau2|chr15 (47075857-47076492)
               

               
               1-636, gnl|canFam2|chr18 (47145837-47145048)
               

               
               1-636, gnl|echTel1|scaffold_89523 (10393-9478)
               

               
               1-636, gnl|hg17|chr11 (45211861-45212774)
               

               
               1-636, gnl|Hg17|chr11 (45212367-45212966)
               

               
               1-636, gnl|mm7|chr2 (92817120-92816331)
               

               
               1-636, gnl|Mm7|chr2 (92816718-92816144)
               

               
               1-636, gnl|monDom2|scaffold_33 (11025209-11026262)
               

               
               1-636, gnl|panTro1|chr9 (45718100-45719013)
               

               
               1-636, gnl|rheMac2|chr14 (26883057-26882143)
               

               
               1-636, gnl|rn3|chr3 (77264028-77263219)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr15 (47075857-47076492)
               

               
               1-636, gnl|canFam2|chr18 (47145837-47145048)
               

               
               1-636, gnl|echTel1|scaffold_89523 (10393-9478)
               

               
               1-636, gnl|hg17|chr11 (45211861-45212774)
               

               
               1-636, gnl|Hg17|chr11 (45212367-45212966)
               

               
               1-636, gnl|mm7|chr2 (92817120-92816331)
               

               
               1-636, gnl|Mm7|chr2 (92816718-92816144)
               

               
               1-636, gnl|monDom2|scaffold_33 (11025209-11026262)
               

               
               1-636, gnl|panTro1|chr9 (45718100-45719013)
               

               
               1-636, gnl|rheMac2|chr14 (26883057-26882143)
               

               
               1-636, gnl|rn3|chr3 (77264028-77263219)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               eye (0.170503)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.170503)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	158-385, - strand, RNAz p=0.999785
	222-346, - strand, RNAz p=0.998137
	421-609, - strand, RNAz p=0.863398

	262-333, + strand, RNAmicro p=0.999752
	180-274, - strand, RNAmicro p=0.92548

	1-636, gnl\|bosTau2\|chr15 (47075857-47076492)
	1-636, gnl\|canFam2\|chr18 (47145837-47145048)
	1-636, gnl\|echTel1\|scaffold_89523 (10393-9478)
	1-636, gnl\|hg17\|chr11 (45211861-45212774)
	1-636, gnl\|Hg17\|chr11 (45212367-45212966)
	1-636, gnl\|mm7\|chr2 (92817120-92816331)
	1-636, gnl\|Mm7\|chr2 (92816718-92816144)
	1-636, gnl\|monDom2\|scaffold_33 (11025209-11026262)
	1-636, gnl\|panTro1\|chr9 (45718100-45719013)
	1-636, gnl\|rheMac2\|chr14 (26883057-26882143)
	1-636, gnl\|rn3\|chr3 (77264028-77263219)