Non-Coding RNA Search

Ss1.1-Mixn-0001c24.5

Sequence:


               
               ATCCTCCGGGTTCCTCCCTCCCTCAAGATGGCAGCAGCCGAAGATGAGTTACTGCTACCG
CGGCTCCCCGAACTGTTCGAAACCAGCAAGCAGCTCCTGGATGAGGTGGAAGTAGCGACT
GAACCCACTGGCTCCCGCATAATCCAAGATAAAGTGGTCAAGGGACTAGACCTCCTGAAG
AAGGCTGCCGAAATGTTATCGCAGCTCGACCTGTTCAGCCGAAATGAAGATTTGGAAGAG
ATTGCTTCCACCGACCTGAAGTACCTGATGGTGCCAGCATTTCAAGGAGCGTTCGCCTTG
AAACAAGTCAACCTCAGCAAACGTCTAGAACACTTGCAGTGGGCTCGAGAACACTTTTCA
AACTATTTAACTCAGTGCCAATACTATCATGTGGCAGAGTTTGAGCTGCCCAAAACCAAG
ACCAACTCAGCAGAAAATAACACTGCTAATTCCTCCGTGGCCTATCCTAGCCTCGTTGCT
ATGGCATCTCAGAGACAGGCTAAGATAGAGAGATACAAGCAGAAGAAGGAGGTGGAACAT
AGGTTGTCAGCACTGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGAACGTGTTCGT
GAATATTACCTCCTTCATCTTCGAAGGTGGATTGGGATCAGCTTGGAAGAGATTGAGAGC
ATTGACCAGGAGATAATGATCCTGAGAGAAAAAGACTCTTCAAAAGAGGCATCAACTTCT
CACTCATCTCGTCAGGATAAGCCTCCAATGAAACCGTTTGTTCTTACTCGGAACATGGCC
CAAGCCAAAGTGTTTGGAGCTGGTTATCCAAGTCTGGCATCTATGACGGTAAATGATTGG
TATGATCAGCATCGGAAACTTGGAGCACTACCAGATCAAGGAATAGCCAAGACTACAACA
GAGTTCAAAAGGGCAGCTCAGCAACAAGAAGATCAGGAAGAAGAGGAGGAAGAGGAAGAT
GAACAAGCACTCCACAGAGCTCGGGAGTGGGATGACTGGAAGGACACCCATCCTAGGGGC
TATGGCAACCGACAGAACATGGGTTAGTCTCCCCACAAAAACACAAGTCAGGACTACGGG
GTGCCCATTTTCCCTGCCAAGGAAAGCTGTGCAGTCTTCCCCTCCCTGGGCTTCTGCTTC
AGCCATGTGCAACAAAGGCAGAGACGCTTGATCTTGCTTTGCATTCAATAAAGTGTCAAA
CAGTTAAGTGTGTATTTTTACCCTAGATGATGAGCCAGTGATCTTGTTTTGGCGTTATCA
TCCTCATCATGGTATATTACAATTTTCTTAAGTGGAAAGAAATTAATACTGATAAATAGC
TCTGTATAATCAATGGCTGTATGAATTCTCTCTAAAAAATAATAAAGGTCCCTTCTATCA
CATGAGCCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTCCGGGTTCCTCCCTCCCTCAAGATGGCAGCAGCCGAAGATGAGTTACTGCTACCG
CGGCTCCCCGAACTGTTCGAAACCAGCAAGCAGCTCCTGGATGAGGTGGAAGTAGCGACT
GAACCCACTGGCTCCCGCATAATCCAAGATAAAGTGGTCAAGGGACTAGACCTCCTGAAG
AAGGCTGCCGAAATGTTATCGCAGCTCGACCTGTTCAGCCGAAATGAAGATTTGGAAGAG
ATTGCTTCCACCGACCTGAAGTACCTGATGGTGCCAGCATTTCAAGGAGCGTTCGCCTTG
AAACAAGTCAACCTCAGCAAACGTCTAGAACACTTGCAGTGGGCTCGAGAACACTTTTCA
AACTATTTAACTCAGTGCCAATACTATCATGTGGCAGAGTTTGAGCTGCCCAAAACCAAG
ACCAACTCAGCAGAAAATAACACTGCTAATTCCTCCGTGGCCTATCCTAGCCTCGTTGCT
ATGGCATCTCAGAGACAGGCTAAGATAGAGAGATACAAGCAGAAGAAGGAGGTGGAACAT
AGGTTGTCAGCACTGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGAACGTGTTCGT
GAATATTACCTCCTTCATCTTCGAAGGTGGATTGGGATCAGCTTGGAAGAGATTGAGAGC
ATTGACCAGGAGATAATGATCCTGAGAGAAAAAGACTCTTCAAAAGAGGCATCAACTTCT
CACTCATCTCGTCAGGATAAGCCTCCAATGAAACCGTTTGTTCTTACTCGGAACATGGCC
CAAGCCAAAGTGTTTGGAGCTGGTTATCCAAGTCTGGCATCTATGACGGTAAATGATTGG
TATGATCAGCATCGGAAACTTGGAGCACTACCAGATCAAGGAATAGCCAAGACTACAACA
GAGTTCAAAAGGGCAGCTCAGCAACAAGAAGATCAGGAAGAAGAGGAGGAAGAGGAAGAT
GAACAAGCACTCCACAGAGCTCGGGAGTGGGATGACTGGAAGGACACCCATCCTAGGGGC
TATGGCAACCGACAGAACATGGGTTAGTCTCCCCACAAAAACACAAGTCAGGACTACGGG
GTGCCCATTTTCCCTGCCAAGGAAAGCTGTGCAGTCTTCCCCTCCCTGGGCTTCTGCTTC
AGCCATGTGCAACAAAGGCAGAGACGCTTGATCTTGCTTTGCATTCAATAAAGTGTCAAA
CAGTTAAGTGTGTATTTTTACCCTAGATGATGAGCCAGTGATCTTGTTTTGGCGTTATCA
TCCTCATCATGGTATATTACAATTTTCTTAAGTGGAAAGAAATTAATACTGATAAATAGC
TCTGTATAATCAATGGCTGTATGAATTCTCTCTAAAAAATAATAAAGGTCCCTTCTATCA
CATGAGCCTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61879489|ref|XP_613817.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879489|ref|XP_613817.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               211-512, gnl|bosTau2|chrX (20824617-20824316)
               

               
               211-512, gnl|Hg17|chrX (69137387-69137687)
               

               
               211-512, gnl|Mm7|chrX (95822252-95822553)
               


               
               899-1392, gnl|bosTau2|chrX (20781036-20780542)
               

               
               899-1392, gnl|Hg17|chrX (69168704-69169189)
               

               
               899-1392, gnl|Mm7|chrX (95842912-95843353)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-512, gnl|bosTau2|chrX (20824617-20824316)
               

               
               211-512, gnl|Hg17|chrX (69137387-69137687)
               

               
               211-512, gnl|Mm7|chrX (95822252-95822553)
               


               
               899-1392, gnl|bosTau2|chrX (20781036-20780542)
               

               
               899-1392, gnl|Hg17|chrX (69168704-69169189)
               

               
               899-1392, gnl|Mm7|chrX (95842912-95843353)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               sto (0.359648)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	211-512, gnl\|bosTau2\|chrX (20824617-20824316)
	211-512, gnl\|Hg17\|chrX (69137387-69137687)
	211-512, gnl\|Mm7\|chrX (95822252-95822553)

	899-1392, gnl\|bosTau2\|chrX (20781036-20780542)
	899-1392, gnl\|Hg17\|chrX (69168704-69169189)
	899-1392, gnl\|Mm7\|chrX (95842912-95843353)

	sto (0.359648)
	fhi (0.339155)
	tbr (0.308356)
	ski (0.29347)
	fce (0.271592)
	cbe (0.239234)
	pgl (0.236967)
	ebs (0.236602)
	aor (0.195274)
	fty (0.17584)
	eli (0.151814)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)