Non-Coding RNA Search

Ss1.1-Mixn-0001d21.5

Sequence:


               
               AAAAAAAAAAAAAAACAAAAACAAAACAACCACCCAGTCTCAGCCTGGCTACTATGCGTG
AGGCCTGATCATCTCCGGGCACCTGTAAGACGACCAACCCAGCAACACCTAGCACAGCTG
GGCTTTGGTTTCCATATTTGCCATGTGTCTGTCCAGAATCAGGGGTTGGGTGGGGATAAG
GCTTCGCCCAGTGGATTGTTCAGCATTGCACCTGGGGAAGATGGGGTGAGGCTGGGGAAC
TGGGGCAAAGTCCTCTCCCTTTGTGGATTTGCCGAGTCTGCCCCGTGCAGGGGGCCGGAG
AATGGCTTGTGGGGGCCCAGGTTGGATGGGTGAAGGCTCACAGGGTCAGGTCCCACCCCC
CAGCCACACCCCTCAAGTCAGCCCCAGGCTCCATTCCTGCAGCTCAGCTGGGAGCGTCGC
TCTCCTGCTTTGTAAATACAGCTCGATCCCCTTCATGAGGCCACCATCATGTCCAGGCCT
ATGCTAGGAAGCTCTTGCTAGGTTCTGCCTTCGTTTTTCTCAACACTACTTTTCTGATAA
GAAGGCAGCACCTTCTGAATGGGAAATCATGTGACCACCCAGAATGTATCGCCCTTGTCC
AGTGTTCATTGGTTTAATGGTGATGCCTCACGTGCAGGATCTGGTTGTTACCTGTTCAGT
TGTAAACACCCAGACATTAGACAGATCAGTGTCTCTAGTCCTACCCAGTTTCAAGTTCCT
AGTACGATCTGACCCTTTCTCCCCCAAATAAATGTATTGGTGGTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAACAAAAACAAAACAACCACCCAGTCTCAGCCTGGCTACTATGCGTG
AGGCCTGATCATCTCCGGGCACCTGTAAGACGACCAACCCAGCAACACCTAGCACAGCTG
GGCTTTGGTTTCCATATTTGCCATGTGTCTGTCCAGAATCAGGGGTTGGGTGGGGATAAG
GCTTCGCCCAGTGGATTGTTCAGCATTGCACCTGGGGAAGATGGGGTGAGGCTGGGGAAC
TGGGGCAAAGTCCTCTCCCTTTGTGGATTTGCCGAGTCTGCCCCGTGCAGGGGGCCGGAG
AATGGCTTGTGGGGGCCCAGGTTGGATGGGTGAAGGCTCACAGGGTCAGGTCCCACCCCC
CAGCCACACCCCTCAAGTCAGCCCCAGGCTCCATTCCTGCAGCTCAGCTGGGAGCGTCGC
TCTCCTGCTTTGTAAATACAGCTCGATCCCCTTCATGAGGCCACCATCATGTCCAGGCCT
ATGCTAGGAAGCTCTTGCTAGGTTCTGCCTTCGTTTTTCTCAACACTACTTTTCTGATAA
GAAGGCAGCACCTTCTGAATGGGAAATCATGTGACCACCCAGAATGTATCGCCCTTGTCC
AGTGTTCATTGGTTTAATGGTGATGCCTCACGTGCAGGATCTGGTTGTTACCTGTTCAGT
TGTAAACACCCAGACATTAGACAGATCAGTGTCTCTAGTCCTACCCAGTTTCAAGTTCCT
AGTACGATCTGACCCTTTCTCCCCCAAATAAATGTATTGGTGGTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               155-272, + strand, RNAz p=0.542088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-272, + strand, RNAz p=0.542088

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-494, gnl|bosTau2|chr17 (21915249-21915739)
               

               
               10-494, gnl|Hg17|chr6 (139013025-139012552)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-494, gnl|bosTau2|chr17 (21915249-21915739)
               

               
               10-494, gnl|Hg17|chr6 (139013025-139012552)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

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               fcc (1.18671)
               

               
               fce (1.08637)
               

               
               elu (0.770713)
               

               
               ton (0.702001)
               

               
               cov (0.660764)
               

               
               hyp (0.571347)
               

               
               amn (0.417711)
               

               
               eru (0.360144)
               

               
               clu (0.358938)
               

               
               cli (0.305623)
               

               
               nbm (0.297974)
               

               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.18671)
               

               
               fce (1.08637)
               

               
               elu (0.770713)
               

               
               ton (0.702001)
               

               
               cov (0.660764)
               

               
               hyp (0.571347)
               

               
               amn (0.417711)
               

               
               eru (0.360144)
               

               
               clu (0.358938)
               

               
               cli (0.305623)
               

               
               nbm (0.297974)
               

               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	10-494, gnl\|bosTau2\|chr17 (21915249-21915739)
	10-494, gnl\|Hg17\|chr6 (139013025-139012552)

	fcc (1.18671)
	fce (1.08637)
	elu (0.770713)
	ton (0.702001)
	cov (0.660764)
	hyp (0.571347)
	amn (0.417711)
	eru (0.360144)
	clu (0.358938)
	cli (0.305623)
	nbm (0.297974)
	cst (0.280073)
	cly (0.241284)
	cbe (0.239234)
	ebs (0.236602)
	ecc (0.23007)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	jej (0.197844)
	col (0.195008)
	nlu (0.191681)
	sto (0.179824)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	mga (0.160205)
	lnt (0.142308)
	ese (0.126502)
	eep (0.122564)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)