Ss1.1-Mixn-0001d23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCCTGGCAAAGCCGCCCCTGTGTTTGGAGACCGAGCTATTACAGCTCCGAGAGGAGA ACTGTCGCCTGCGGTCCCAACTGGGCCAGATGGACCCCAAGGCCTCTAGCCTTGCTGGGG CCCGGGTTGCCTGGGCTCAGCGGAACCTCTACGGGATGCTACAGGAGTTCATGCTGGAGA ATGAGAGGCTCAGGAAAGAAAAGAGGCAGCTGCAGAGCAGCCGGGATCTGGCCCGGGATG AGCAGCGCGTCCTGGCACAGCAGGTCCATGAGCTCGAGAGACGCCTCCTCTCTGCCTGCT ACCTTCACCAGCCAGGCTCTGGCCCAGCCCCACCGTGTCCCTGTGTGATGATGCCACCTC CCCCCTGCCACGCCCTGCCACCCCTCTGCTCCTGTTCCTGCTGCCACATCTGCCCCCTGT GCCGAGCACCGCTGGCCCACTGGGCCTGCCCACAGAGGGAGCTCCACATGCCCCAGATGT TTGTCTCTAAGGCCCCAGGTGACGTGCCCCTGTCTGCTCGGCCCCCACCCTGGGCCCCCC CATGCAGCCCTGGCTCTGCCAAGTGCTCAAGAGAGAGGAGTCACAGCGACTGGACTCAGA CCCGAGTCCTGGCAGAGATGCTGACCAAGGAGGAAGTGATACCCTCTGCACCCCCACTGC CCGCGGGGCCCCTGAACACATCACCAGTGCCAAGAGGTGGGGCTGCAGTTCCAAACCTGG CCCGGAGGCTGGAGGCCCTCAGAGACCAGATCGGCAGCTCCCTGCGACGTGGCCGGAGCC AGCCACCCCCCAATGAGGGCATGCGGAGCCCTAGCCGAGTCCTCCCTCCCTGCTGAGGGC AAAGTGGGAACCCAGGAGACCACCGTGCGACCTTGGACTGGGCTCTGTGCTCCTGGGCTG CAGTCTCCCCGTCTGTTGCATGGGGTAGTGGCCGCTGCTCCAGTCTGCAGCTGGGCTAGG GGAGAGGGCCGGTGGGGCAGTTTGGGGAAGCCAAGGGAGGGTGCCACCCCGAGCTAGATG AAGTGAGACTGGATTCCGGAGAAACCAGGCAGCAGGCGATGACATTTATGAATAAAGAGA GGCATCAGCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCCTGGCAAAGCCGCCCCTGTGTTTGGAGACCGAGCTATTACAGCTCCGAGAGGAGA ACTGTCGCCTGCGGTCCCAACTGGGCCAGATGGACCCCAAGGCCTCTAGCCTTGCTGGGG CCCGGGTTGCCTGGGCTCAGCGGAACCTCTACGGGATGCTACAGGAGTTCATGCTGGAGA ATGAGAGGCTCAGGAAAGAAAAGAGGCAGCTGCAGAGCAGCCGGGATCTGGCCCGGGATG AGCAGCGCGTCCTGGCACAGCAGGTCCATGAGCTCGAGAGACGCCTCCTCTCTGCCTGCT ACCTTCACCAGCCAGGCTCTGGCCCAGCCCCACCGTGTCCCTGTGTGATGATGCCACCTC CCCCCTGCCACGCCCTGCCACCCCTCTGCTCCTGTTCCTGCTGCCACATCTGCCCCCTGT GCCGAGCACCGCTGGCCCACTGGGCCTGCCCACAGAGGGAGCTCCACATGCCCCAGATGT TTGTCTCTAAGGCCCCAGGTGACGTGCCCCTGTCTGCTCGGCCCCCACCCTGGGCCCCCC CATGCAGCCCTGGCTCTGCCAAGTGCTCAAGAGAGAGGAGTCACAGCGACTGGACTCAGA CCCGAGTCCTGGCAGAGATGCTGACCAAGGAGGAAGTGATACCCTCTGCACCCCCACTGC CCGCGGGGCCCCTGAACACATCACCAGTGCCAAGAGGTGGGGCTGCAGTTCCAAACCTGG CCCGGAGGCTGGAGGCCCTCAGAGACCAGATCGGCAGCTCCCTGCGACGTGGCCGGAGCC AGCCACCCCCCAATGAGGGCATGCGGAGCCCTAGCCGAGTCCTCCCTCCCTGCTGAGGGC AAAGTGGGAACCCAGGAGACCACCGTGCGACCTTGGACTGGGCTCTGTGCTCCTGGGCTG CAGTCTCCCCGTCTGTTGCATGGGGTAGTGGCCGCTGCTCCAGTCTGCAGCTGGGCTAGG GGAGAGGGCCGGTGGGGCAGTTTGGGGAAGCCAAGGGAGGGTGCCACCCCGAGCTAGATG AAGTGAGACTGGATTCCGGAGAAACCAGGCAGCAGGCGATGACATTTATGAATAAAGAGA GGCATCAGCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 11-127, - strand, RNAz p=0.652483 | |
| 799-1058, + strand, RNAz p=0.998497 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 11-127, - strand, RNAz p=0.652483 | |
| 799-1058, + strand, RNAz p=0.998497 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_138424, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-127, gnl|bosTau2|chr8 (58254430-58254305) | |
| 1-127, gnl|Hg17|chr9 (113936288-113936163) | |
| 1-127, gnl|Mm7|chr4 (62601699-62601573) | |
| 474-578, gnl|bosTau2|chr8 (58252606-58252502) | |
| 474-578, gnl|canFam2|chr11 (71392402-71392857) | |
| 474-578, gnl|echTel1|scaffold_274620 (3301-3707) | |
| 474-578, gnl|hg17|chr9 (113934099-113934532) | |
| 474-578, gnl|Hg17|chr9 (113934479-113934375) | |
| 474-578, gnl|mm7|chr4 (62599887-62600259) | |
| 474-578, gnl|Mm7|chr4 (62600206-62600102) | |
| 474-578, gnl|oryCun1|scaffold_183986 (21667-21238) | |
| 474-578, gnl|panTro1|chr11 (98471414-98471847) | |
| 474-578, gnl|rheMac2|chr15 (22037289-22036855) | |
| 474-578, gnl|rn3|chr5 (80152001-80152380) | |
| 682-1090, gnl|bosTau2|chr8 (58252000-58251574) | |
| 682-1090, gnl|canFam2|chr11 (71391733-71392178) | |
| 682-1090, gnl|echTel1|scaffold_274620 (2727-3157) | |
| 682-1090, gnl|hg17|chr9 (113933449-113933858) | |
| 682-1090, gnl|Hg17|chr9 (113933847-113933476) | |
| 682-1090, gnl|loxAfr1|scaffold_3441 (995-1463) | |
| 682-1090, gnl|mm7|chr4 (62599308-62599691) | |
| 682-1090, gnl|Mm7|chr4 (62599680-62599334) | |
| 682-1090, gnl|oryCun1|scaffold_198489 (43546-43102) | |
| 682-1090, gnl|panTro1|chr11 (98470763-98471172) | |
| 682-1090, gnl|rheMac2|chr15 (22037965-22037591) | |
| 682-1090, gnl|rn3|chr5 (80151440-80151812) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-127, gnl|bosTau2|chr8 (58254430-58254305) | |
| 1-127, gnl|Hg17|chr9 (113936288-113936163) | |
| 1-127, gnl|Mm7|chr4 (62601699-62601573) | |
| 474-578, gnl|bosTau2|chr8 (58252606-58252502) | |
| 474-578, gnl|canFam2|chr11 (71392402-71392857) | |
| 474-578, gnl|echTel1|scaffold_274620 (3301-3707) | |
| 474-578, gnl|hg17|chr9 (113934099-113934532) | |
| 474-578, gnl|Hg17|chr9 (113934479-113934375) | |
| 474-578, gnl|mm7|chr4 (62599887-62600259) | |
| 474-578, gnl|Mm7|chr4 (62600206-62600102) | |
| 474-578, gnl|oryCun1|scaffold_183986 (21667-21238) | |
| 474-578, gnl|panTro1|chr11 (98471414-98471847) | |
| 474-578, gnl|rheMac2|chr15 (22037289-22036855) | |
| 474-578, gnl|rn3|chr5 (80152001-80152380) | |
| 682-1090, gnl|bosTau2|chr8 (58252000-58251574) | |
| 682-1090, gnl|canFam2|chr11 (71391733-71392178) | |
| 682-1090, gnl|echTel1|scaffold_274620 (2727-3157) | |
| 682-1090, gnl|hg17|chr9 (113933449-113933858) | |
| 682-1090, gnl|Hg17|chr9 (113933847-113933476) | |
| 682-1090, gnl|loxAfr1|scaffold_3441 (995-1463) | |
| 682-1090, gnl|mm7|chr4 (62599308-62599691) | |
| 682-1090, gnl|Mm7|chr4 (62599680-62599334) | |
| 682-1090, gnl|oryCun1|scaffold_198489 (43546-43102) | |
| 682-1090, gnl|panTro1|chr11 (98470763-98471172) | |
| 682-1090, gnl|rheMac2|chr15 (22037965-22037591) | |
| 682-1090, gnl|rn3|chr5 (80151440-80151812) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| ute (0.132784) | |
| eje (0.0988338) |