Non-Coding RNA Search

Ss1.1-Mixn-0001i23.5

Sequence:


               
               TCCAATCCAACAATCCACACATTCCTACCCAAAACCAATCGAGGATTTAAAAGCTAGATC
TGAGGCGAGAGACAGGCTAGAACTAGCAGGAACAAGTCTGTACAAGATGCATTCATCCTT
CACTGCCTCTGCTCCAGGTCATCCCAGGACTAAGCGTGTGGGCAGATGCCAAGATGGAAA
GAATGGGTTGGTGCCTGTTTTCAAGCGTATCTGGGTAAGGACTCAACAAGAGTGAGAGAG
GGAGTCGCTGCGCTCAAAGCAACGAAGGTGTGCAATTGCCGGCTGATCAAAGGGCACTTT
CAGCAGTTGCATGCCTAAGCCTGAGGCGGCTCACACTCGGTCGGAAAGGGAGCTCAGACA
ATGGGGAGCTAACACACTGGATCTCAGGGGTGATGTCCAAGAGGAGGTCTCTGGAGCTGG
GTGTCATCCTTTAGGGTGGCCCAGAACAAAATGGTGACGCATTATGCCTCCTGGTGAGTT
CATATATACTGTGAACGGCACAGACACCAAGTCCCGGGGACTTCCAACGAAGATCCTGGG
GCAAGGACGGATGTCCACCAGCAATCTCTGGGACCTGATGTGAGACACACTTCCCTGCCG
CGGACGAGGAAGAGGGGACCGCCACCGCTGCCGCCACCGCCGCCGCCGCCGTCCGACGAT
GACAGACAAATCTGCAGCTTGAATGGGACACCCTGGCGATCTGCTGCACGATCGGCCTCT
CGCTCCGCCCGGCCGGCCCCCTTCCCTGCCCCCTGCGGGACCGGCCTGCGCGCAGCGCTG
GAACCACGTANG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAATCCAACAATCCACACATTCCTACCCAAAACCAATCGAGGATTTAAAAGCTAGATC
TGAGGCGAGAGACAGGCTAGAACTAGCAGGAACAAGTCTGTACAAGATGCATTCATCCTT
CACTGCCTCTGCTCCAGGTCATCCCAGGACTAAGCGTGTGGGCAGATGCCAAGATGGAAA
GAATGGGTTGGTGCCTGTTTTCAAGCGTATCTGGGTAAGGACTCAACAAGAGTGAGAGAG
GGAGTCGCTGCGCTCAAAGCAACGAAGGTGTGCAATTGCCGGCTGATCAAAGGGCACTTT
CAGCAGTTGCATGCCTAAGCCTGAGGCGGCTCACACTCGGTCGGAAAGGGAGCTCAGACA
ATGGGGAGCTAACACACTGGATCTCAGGGGTGATGTCCAAGAGGAGGTCTCTGGAGCTGG
GTGTCATCCTTTAGGGTGGCCCAGAACAAAATGGTGACGCATTATGCCTCCTGGTGAGTT
CATATATACTGTGAACGGCACAGACACCAAGTCCCGGGGACTTCCAACGAAGATCCTGGG
GCAAGGACGGATGTCCACCAGCAATCTCTGGGACCTGATGTGAGACACACTTCCCTGCCG
CGGACGAGGAAGAGGGGACCGCCACCGCTGCCGCCACCGCCGCCGCCGCCGTCCGACGAT
GACAGACAAATCTGCAGCTTGAATGGGACACCCTGGCGATCTGCTGCACGATCGGCCTCT
CGCTCCGCCCGGCCGGCCCCCTTCCCTGCCCCCTGCGGGACCGGCCTGCGCGCAGCGCTG
GAACCACGTANG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               334-570, + strand, RNAz p=0.688937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-570, + strand, RNAz p=0.688937

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-589, gnl|bosTau2|chr23 (35485059-35484481)
               

               
               5-589, gnl|Hg17|chr6 (16847536-16848144)
               

               
               5-589, gnl|Mm7|chr13 (45391275-45391767)
               


               
               622-792, gnl|bosTau2|chr23 (35461586-35461419)
               

               
               622-792, gnl|canFam2|chr35 (18871935-18872154)
               

               
               622-792, gnl|hg17|chr6 (16868152-16868355)
               

               
               622-792, gnl|Hg17|chr6 (16868159-16868342)
               

               
               622-792, gnl|loxAfr1|scaffold_543 (133958-133779)
               

               
               622-792, gnl|mm7|chr13 (45413940-45414135)
               

               
               622-792, gnl|Mm7|chr13 (45413947-45414122)
               

               
               622-792, gnl|monDom2|scaffold_3 (105707419-105707652)
               

               
               622-792, gnl|oryCun1|scaffold_212135 (114658-114470)
               

               
               622-792, gnl|rheMac2|chr4 (16785309-16785524)
               

               
               622-792, gnl|rn3|chr17 (24723807-24723557)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-589, gnl|bosTau2|chr23 (35485059-35484481)
               

               
               5-589, gnl|Hg17|chr6 (16847536-16848144)
               

               
               5-589, gnl|Mm7|chr13 (45391275-45391767)
               


               
               622-792, gnl|bosTau2|chr23 (35461586-35461419)
               

               
               622-792, gnl|canFam2|chr35 (18871935-18872154)
               

               
               622-792, gnl|hg17|chr6 (16868152-16868355)
               

               
               622-792, gnl|Hg17|chr6 (16868159-16868342)
               

               
               622-792, gnl|loxAfr1|scaffold_543 (133958-133779)
               

               
               622-792, gnl|mm7|chr13 (45413940-45414135)
               

               
               622-792, gnl|Mm7|chr13 (45413947-45414122)
               

               
               622-792, gnl|monDom2|scaffold_3 (105707419-105707652)
               

               
               622-792, gnl|oryCun1|scaffold_212135 (114658-114470)
               

               
               622-792, gnl|rheMac2|chr4 (16785309-16785524)
               

               
               622-792, gnl|rn3|chr17 (24723807-24723557)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	5-589, gnl\|bosTau2\|chr23 (35485059-35484481)
	5-589, gnl\|Hg17\|chr6 (16847536-16848144)
	5-589, gnl\|Mm7\|chr13 (45391275-45391767)

	622-792, gnl\|bosTau2\|chr23 (35461586-35461419)
	622-792, gnl\|canFam2\|chr35 (18871935-18872154)
	622-792, gnl\|hg17\|chr6 (16868152-16868355)
	622-792, gnl\|Hg17\|chr6 (16868159-16868342)
	622-792, gnl\|loxAfr1\|scaffold_543 (133958-133779)
	622-792, gnl\|mm7\|chr13 (45413940-45414135)
	622-792, gnl\|Mm7\|chr13 (45413947-45414122)
	622-792, gnl\|monDom2\|scaffold_3 (105707419-105707652)
	622-792, gnl\|oryCun1\|scaffold_212135 (114658-114470)
	622-792, gnl\|rheMac2\|chr4 (16785309-16785524)
	622-792, gnl\|rn3\|chr17 (24723807-24723557)