Ss1.1-Mixn-0001l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAATGGGGAACAGATGAAGCCCAGTTCATTTACATTTTGGGAAATCGCAGCAAGCAG CATCTTCGGCTGGTGTTTGACGAGTACCTGAAGACCACAGGGAAGCCGATCGAAGCCAGC ATCCGCGGGGAGCTGTCCGGGGACTTCGAGAAGCTGATGCTGGCTGTAGTGAAGTGTATC CGGAGCACCCCGGAGTATTTTGCTGAAAGGCTCTTCAAGGCTATGAAGGGCCTGGGGACT CGGGACAACACCCTGATTCGCATCATGGTCTCGCGCAGCGAGCTGGACATGCTGGACATC CGGGAGATATTCCGGACCAAGTATGAAAAGTCCCTGTACAGCATGATCAAGAATGACACC TCTGGAGAATACAAGAAGGCGCTTCTGAAGCTGTGTGGGGGAGACGATGATGCTGCTGGC CAGTTCTTCCCGGAGGCAGCGCAGGTGGCCTATCAGATGTGGGAGCTTAGTGCAGTGGCC CGAGTAGAGCTGAAAGGCACCGTGCACCCAGCTGGGGACTTCAATCCTGACGCAGATGCC AAAGCCTTGCGGAAAGCCATGAAGGGACTTGGAACTGACGAGGACACCATCATCGACATC GTCACGCGCCGCAGCAACGCCCAGCGGCAGCAGATCCGCCAGACCTTCAAGTCTCACTTC GGCCGGGACCTGATGGCTGACCTCAAATCCGAGCTCTCTGGAGACCTGGCAAGGCTGATT CTGGGGCTTATGATGCCACCAGCCCATTACGATGCCAAGCAGTTGAAGAAGGCCATGGAG CAGGCCTCGTCCTTGGTGTGTAGACGGCCGTCTTCTCTCTGCGTCTCCAAGGGTCACCGT CATCCCTCTGTGTGTGCCAGCGTCCTACTCCCCTCTTCTTCTAAGGGCACCAGCCACACA GGCGAGGAGCCCCTCGCGGCCTCACTTAACTAACGGCCGTCGCCTCTGTAGAGGCCCCGC TCCGAGGGCACGCACATCCCAAGGTACCGGTTAGCACGCCAGCCTTTGCCTTCCCCAGGG ACACGGTTCAGATGCTGACAGGTCCCCAGACAGGACATATGTGTCCCCGAAAAGGAGAAT TCAGACAGCCTGAGACACACCCTGCTTCCCTTGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAATGGGGAACAGATGAAGCCCAGTTCATTTACATTTTGGGAAATCGCAGCAAGCAG CATCTTCGGCTGGTGTTTGACGAGTACCTGAAGACCACAGGGAAGCCGATCGAAGCCAGC ATCCGCGGGGAGCTGTCCGGGGACTTCGAGAAGCTGATGCTGGCTGTAGTGAAGTGTATC CGGAGCACCCCGGAGTATTTTGCTGAAAGGCTCTTCAAGGCTATGAAGGGCCTGGGGACT CGGGACAACACCCTGATTCGCATCATGGTCTCGCGCAGCGAGCTGGACATGCTGGACATC CGGGAGATATTCCGGACCAAGTATGAAAAGTCCCTGTACAGCATGATCAAGAATGACACC TCTGGAGAATACAAGAAGGCGCTTCTGAAGCTGTGTGGGGGAGACGATGATGCTGCTGGC CAGTTCTTCCCGGAGGCAGCGCAGGTGGCCTATCAGATGTGGGAGCTTAGTGCAGTGGCC CGAGTAGAGCTGAAAGGCACCGTGCACCCAGCTGGGGACTTCAATCCTGACGCAGATGCC AAAGCCTTGCGGAAAGCCATGAAGGGACTTGGAACTGACGAGGACACCATCATCGACATC GTCACGCGCCGCAGCAACGCCCAGCGGCAGCAGATCCGCCAGACCTTCAAGTCTCACTTC GGCCGGGACCTGATGGCTGACCTCAAATCCGAGCTCTCTGGAGACCTGGCAAGGCTGATT CTGGGGCTTATGATGCCACCAGCCCATTACGATGCCAAGCAGTTGAAGAAGGCCATGGAG CAGGCCTCGTCCTTGGTGTGTAGACGGCCGTCTTCTCTCTGCGTCTCCAAGGGTCACCGT CATCCCTCTGTGTGTGCCAGCGTCCTACTCCCCTCTTCTTCTAAGGGCACCAGCCACACA GGCGAGGAGCCCCTCGCGGCCTCACTTAACTAACGGCCGTCGCCTCTGTAGAGGCCCCGC TCCGAGGGCACGCACATCCCAAGGTACCGGTTAGCACGCCAGCCTTTGCCTTCCCCAGGG ACACGGTTCAGATGCTGACAGGTCCCCAGACAGGACATATGTGTCCCCGAAAAGGAGAAT TCAGACAGCCTGAGACACACCCTGCTTCCCTTGTCC |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 224-351, gnl|bosTau2|chr7 (43025758-43025631) | |
| 224-351, gnl|canFam2|chr4 (61319365-61319208) | |
| 224-351, gnl|danRer3|chrNA (225472299-225472155) | |
| 224-351, gnl|dasNov1|scaffold_69826 (3250-3093) | |
| 224-351, gnl|echTel1|scaffold_89096 (3151-3302) | |
| 224-351, gnl|fr1|chrUn (109779711-109779578) | |
| 224-351, gnl|galGal2|chr13 (11982136-11982003) | |
| 224-351, gnl|hg17|chr5 (150489151-150489308) | |
| 224-351, gnl|Hg17|chr5 (150489288-150489161) | |
| 224-351, gnl|loxAfr1|scaffold_7860 (57086-57241) | |
| 224-351, gnl|mm7|chr11 (54957958-54958115) | |
| 224-351, gnl|Mm7|chr11 (54958095-54957968) | |
| 224-351, gnl|monDom2|scaffold_6 (55398418-55398257) | |
| 224-351, gnl|oryCun1|scaffold_206999 (107997-108162) | |
| 224-351, gnl|panTro1|chr4 (157441532-157441689) | |
| 224-351, gnl|rheMac2|chr6 (147544266-147544423) | |
| 224-351, gnl|rn3|chr10 (40420827-40420984) | |
| 224-351, gnl|tetNig1|chr1 (2481622-2481486) | |
| 666-780, gnl|bosTau2|chr7 (43019951-43019837) | |
| 666-780, gnl|canFam2|chr4 (61325900-61325739) | |
| 666-780, gnl|danRer3|chrNA (225486453-225486334) | |
| 666-780, gnl|dasNov1|scaffold_69826 (9630-9470) | |
| 666-780, gnl|echTel1|scaffold_320954 (4633-4490) | |
| 666-780, gnl|fr1|chrUn (109781496-109781380) | |
| 666-780, gnl|hg17|chr5 (150481880-150482041) | |
| 666-780, gnl|Hg17|chr5 (150482015-150481901) | |
| 666-780, gnl|loxAfr1|scaffold_7860 (49739-49895) | |
| 666-780, gnl|mm7|chr11 (54951202-54951363) | |
| 666-780, gnl|Mm7|chr11 (54951338-54951224) | |
| 666-780, gnl|monDom2|scaffold_6 (55410281-55410123) | |
| 666-780, gnl|oryCun1|scaffold_206999 (101445-101608) | |
| 666-780, gnl|panTro1|chr4 (157434243-157434404) | |
| 666-780, gnl|rheMac2|chr6 (147536961-147537121) | |
| 666-780, gnl|rn3|chr10 (40413890-40414036) | |
| 666-780, gnl|tetNig1|chr1 (2483459-2483317) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 224-351, gnl|bosTau2|chr7 (43025758-43025631) | |
| 224-351, gnl|canFam2|chr4 (61319365-61319208) | |
| 224-351, gnl|danRer3|chrNA (225472299-225472155) | |
| 224-351, gnl|dasNov1|scaffold_69826 (3250-3093) | |
| 224-351, gnl|echTel1|scaffold_89096 (3151-3302) | |
| 224-351, gnl|fr1|chrUn (109779711-109779578) | |
| 224-351, gnl|galGal2|chr13 (11982136-11982003) | |
| 224-351, gnl|hg17|chr5 (150489151-150489308) | |
| 224-351, gnl|Hg17|chr5 (150489288-150489161) | |
| 224-351, gnl|loxAfr1|scaffold_7860 (57086-57241) | |
| 224-351, gnl|mm7|chr11 (54957958-54958115) | |
| 224-351, gnl|Mm7|chr11 (54958095-54957968) | |
| 224-351, gnl|monDom2|scaffold_6 (55398418-55398257) | |
| 224-351, gnl|oryCun1|scaffold_206999 (107997-108162) | |
| 224-351, gnl|panTro1|chr4 (157441532-157441689) | |
| 224-351, gnl|rheMac2|chr6 (147544266-147544423) | |
| 224-351, gnl|rn3|chr10 (40420827-40420984) | |
| 224-351, gnl|tetNig1|chr1 (2481622-2481486) | |
| 666-780, gnl|bosTau2|chr7 (43019951-43019837) | |
| 666-780, gnl|canFam2|chr4 (61325900-61325739) | |
| 666-780, gnl|danRer3|chrNA (225486453-225486334) | |
| 666-780, gnl|dasNov1|scaffold_69826 (9630-9470) | |
| 666-780, gnl|echTel1|scaffold_320954 (4633-4490) | |
| 666-780, gnl|fr1|chrUn (109781496-109781380) | |
| 666-780, gnl|hg17|chr5 (150481880-150482041) | |
| 666-780, gnl|Hg17|chr5 (150482015-150481901) | |
| 666-780, gnl|loxAfr1|scaffold_7860 (49739-49895) | |
| 666-780, gnl|mm7|chr11 (54951202-54951363) | |
| 666-780, gnl|Mm7|chr11 (54951338-54951224) | |
| 666-780, gnl|monDom2|scaffold_6 (55410281-55410123) | |
| 666-780, gnl|oryCun1|scaffold_206999 (101445-101608) | |
| 666-780, gnl|panTro1|chr4 (157434243-157434404) | |
| 666-780, gnl|rheMac2|chr6 (147536961-147537121) | |
| 666-780, gnl|rn3|chr10 (40413890-40414036) | |
| 666-780, gnl|tetNig1|chr1 (2483459-2483317) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| lnt (0.284616) | |
| eru (0.240096) | |
| nca (0.136874) | |
| ute (0.132784) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.284616) | |
| eru (0.240096) | |
| nca (0.136874) | |
| ute (0.132784) | |
| jca (0.11396) | |
| cty (0.10408) |