Non-Coding RNA Search

Ss1.1-Mixn-0001p15.5

Sequence:


               
               CAGCCTCGCTGAGCCGCCCCCGCGCAACGCCTTCCTGTGAGGCGCGCTCGCCAGGCGCTG
ACCATGTCTATCATGGACCACAGCCCCACCACTGGGGTGGTCACGGTCATTGTCATCCTC
ATCGCCATCGCGGCCCTGGGGGCGCTCATCCTGGGCTGCTGGTGCTACCTGCGGCTGCAG
CGCATCAGCCAATCGGAGGACGAGGAGAGCATCGTCGGGGATGGCGAGACCAAGGAGCCC
TTCCTGCTGGTGCAGTACTCGGCCAAGGGGCCGTGCGTGGAGAGGAAGGCCAAGCTGACC
CCCACCGGCCCGGAAGTCCATGGCTGAGCCTCAACGCGGAGGCTCCCGGGCCCGTTCGCA
GCCAGCCGAGAGGCATGGAGGGGCGAGACCACAGACACGCTGCCGTCTGAGAGGAAGGGT
TGACACTTGCTGGCATGGCCTTGCCGGGCTTCGTCATCGCATGCACTGACTCCCAGGGTC
CCGGCTGTCCCGAGCCAGGGCTTGGTGGCCGTGGGCGACCCCTTGGCCTCCTGGTAGGGC
TGCCCATTGCAGGCAGTGGGCAAGCCTGACCTTGCTGGGGCTCATGGCCCTGCAGCGCTT
TTGTTACTTGAATGTTGAGCTGAGCCTGTTTTCGATGGAGCTACTACTGTATAACGCGTC
AACTCACAAGCCTGTGAACTGTAAATAGGCCCCAGAAGCACGTGCTTAAGCCTCTTTTGC
TGATTTTTAAAAATAGCGTATAGAGCACATGGGACTGGCCATACCGACGTTGAGCTGAGT
CGGGGCTCTAGGGGAGGGTCTTAGACGTGTAAGGCCCACGTTGCACTTGGCCGGGGCCTC
TAATATACGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTCGCTGAGCCGCCCCCGCGCAACGCCTTCCTGTGAGGCGCGCTCGCCAGGCGCTG
ACCATGTCTATCATGGACCACAGCCCCACCACTGGGGTGGTCACGGTCATTGTCATCCTC
ATCGCCATCGCGGCCCTGGGGGCGCTCATCCTGGGCTGCTGGTGCTACCTGCGGCTGCAG
CGCATCAGCCAATCGGAGGACGAGGAGAGCATCGTCGGGGATGGCGAGACCAAGGAGCCC
TTCCTGCTGGTGCAGTACTCGGCCAAGGGGCCGTGCGTGGAGAGGAAGGCCAAGCTGACC
CCCACCGGCCCGGAAGTCCATGGCTGAGCCTCAACGCGGAGGCTCCCGGGCCCGTTCGCA
GCCAGCCGAGAGGCATGGAGGGGCGAGACCACAGACACGCTGCCGTCTGAGAGGAAGGGT
TGACACTTGCTGGCATGGCCTTGCCGGGCTTCGTCATCGCATGCACTGACTCCCAGGGTC
CCGGCTGTCCCGAGCCAGGGCTTGGTGGCCGTGGGCGACCCCTTGGCCTCCTGGTAGGGC
TGCCCATTGCAGGCAGTGGGCAAGCCTGACCTTGCTGGGGCTCATGGCCCTGCAGCGCTT
TTGTTACTTGAATGTTGAGCTGAGCCTGTTTTCGATGGAGCTACTACTGTATAACGCGTC
AACTCACAAGCCTGTGAACTGTAAATAGGCCCCAGAAGCACGTGCTTAAGCCTCTTTTGC
TGATTTTTAAAAATAGCGTATAGAGCACATGGGACTGGCCATACCGACGTTGAGCTGAGT
CGGGGCTCTAGGGGAGGGTCTTAGACGTGTAAGGCCCACGTTGCACTTGGCCGGGGCCTC
TAATATACGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6FGI0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FGI0_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-170, - strand, RNAz p=0.734339
               

               
               437-634, + strand, RNAz p=0.999972

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-170, - strand, RNAz p=0.734339
               

               
               437-634, + strand, RNAz p=0.999972

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003498, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003498, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-850, gnl|bosTau2|chr25 (9660850-9661698)
               

               
               12-850, gnl|Hg17|chr16 (11677420-11678192)
               

               
               12-850, gnl|Mm7|chr16 (10751524-10752293)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-850, gnl|bosTau2|chr25 (9660850-9661698)
               

               
               12-850, gnl|Hg17|chr16 (11677420-11678192)
               

               
               12-850, gnl|Mm7|chr16 (10751524-10752293)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               csp (0.161186)

	51-170, - strand, RNAz p=0.734339
	437-634, + strand, RNAz p=0.999972

	12-850, gnl\|bosTau2\|chr25 (9660850-9661698)
	12-850, gnl\|Hg17\|chr16 (11677420-11678192)
	12-850, gnl\|Mm7\|chr16 (10751524-10752293)