Ss1.1-Mixn-0002b16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAAGTGAAGCAGGAAAACAAGTTAAAGTTCTCTGCGTATCTAGAGAGGGAATACAAAG TCCACATCAACCCCAACTCGCTCTTCGACATCCAGGTGAAGCGGATTCACGAATATAAAC GCCAGCTCCTCAACTGCCTCCACGTCATCACACTGTACAACCGCATCAAGAAGGAACCCA ATAAGTTTGTCGTGCCTCGAACGGTGATGATTGGAGGGAAGGCTGCCCCTGGGTACCACA TGGCCAAGATGATCATCAAACTCATTACAGCCATTGGGGATGTGGTCAACCACGATCCCG TGGTGGGAGACCGCCTCCGCGTGATCTTCCTGGAGAACTACCGGGTCTCGCTGGCTGAGA AAGTGATCCCGGCCGCTGACCTCTCGGAGCAGATCTCTACTGCGGGTACCGAGGCCTCGG GCACGGGCAACATGAAGTTCATGCTCAATGGGGCCCTGACCATTGGCACCATGGATGGGG CCAACGTGGAGATGGCAGAAGAGGCGGGGGAGGAGAACTTCTTTATCTTCGGCATGCGGG TGGAGGACGTGGAACGGCTTGACCAGAAAGGGTACAACGCCCAGGAGTATTATGACCGAA TTCCTGAGCTTCGGCACATCATCGATCAGCTGAGCAGTGGCTTCTTCTCCCCGAAACAAC CTGACCTGTTCAAGGACATTGTCAACATGCTCATGCACCATGACCGGTTTAAAGTCTTCG CGGACTATGAAGACTACATTAAGTGCCAGGAGAGAGTCAGTGCCCTGTACAAGAACCCGA GAGAGTGGACGCGGATGGTGATCCGGAACATAGCCACCTCTGGCAAGTTCTCCAGCGACC GCACCATTGCCCAGTATGCCAGGGAGATCTGGGGCGTGGAGCCTTCCCGCCAGCGCCTGC CGGCCCCGGATGAGAAGATCTGAGCCTCTAGACCAGACCCAAACCTGCCCCTGAGTCTGT TCGCAATCCCTCAGGCCTGCGCCAGCTCCTCATCCAGAGGCTGGGGTACTGCAGTTAGAC CTAAACCTCTTCCTGGAACCCCCATTTTCCCCAGCCTCCAGATCCCAGTGTTCAGCGCGA CGAAGGACACTGCTCCCATCCTGTCCTCAGGCTCCCTGCCCCTTCCTATTTATGGGTCCG ACCAGCTGCACCCACTCCCCAATAAACTGATTCTCCTTGGGAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAAGTGAAGCAGGAAAACAAGTTAAAGTTCTCTGCGTATCTAGAGAGGGAATACAAAG TCCACATCAACCCCAACTCGCTCTTCGACATCCAGGTGAAGCGGATTCACGAATATAAAC GCCAGCTCCTCAACTGCCTCCACGTCATCACACTGTACAACCGCATCAAGAAGGAACCCA ATAAGTTTGTCGTGCCTCGAACGGTGATGATTGGAGGGAAGGCTGCCCCTGGGTACCACA TGGCCAAGATGATCATCAAACTCATTACAGCCATTGGGGATGTGGTCAACCACGATCCCG TGGTGGGAGACCGCCTCCGCGTGATCTTCCTGGAGAACTACCGGGTCTCGCTGGCTGAGA AAGTGATCCCGGCCGCTGACCTCTCGGAGCAGATCTCTACTGCGGGTACCGAGGCCTCGG GCACGGGCAACATGAAGTTCATGCTCAATGGGGCCCTGACCATTGGCACCATGGATGGGG CCAACGTGGAGATGGCAGAAGAGGCGGGGGAGGAGAACTTCTTTATCTTCGGCATGCGGG TGGAGGACGTGGAACGGCTTGACCAGAAAGGGTACAACGCCCAGGAGTATTATGACCGAA TTCCTGAGCTTCGGCACATCATCGATCAGCTGAGCAGTGGCTTCTTCTCCCCGAAACAAC CTGACCTGTTCAAGGACATTGTCAACATGCTCATGCACCATGACCGGTTTAAAGTCTTCG CGGACTATGAAGACTACATTAAGTGCCAGGAGAGAGTCAGTGCCCTGTACAAGAACCCGA GAGAGTGGACGCGGATGGTGATCCGGAACATAGCCACCTCTGGCAAGTTCTCCAGCGACC GCACCATTGCCCAGTATGCCAGGGAGATCTGGGGCGTGGAGCCTTCCCGCCAGCGCCTGC CGGCCCCGGATGAGAAGATCTGAGCCTCTAGACCAGACCCAAACCTGCCCCTGAGTCTGT TCGCAATCCCTCAGGCCTGCGCCAGCTCCTCATCCAGAGGCTGGGGTACTGCAGTTAGAC CTAAACCTCTTCCTGGAACCCCCATTTTCCCCAGCCTCCAGATCCCAGTGTTCAGCGCGA CGAAGGACACTGCTCCCATCCTGTCCTCAGGCTCCCTGCCCCTTCCTATTTATGGGTCCG ACCAGCTGCACCCACTCCCCAATAAACTGATTCTCCTTGGGAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 402-521, + strand, RNAz p=0.727307 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 402-521, + strand, RNAz p=0.727307 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 12-163, gnl|bosTau2|chr10 (29325031-29324880) | |
| 12-163, gnl|canFam2|chr8 (30285518-30285677) | |
| 12-163, gnl|danRer3|chr13 (39522512-39522671) | |
| 12-163, gnl|dasNov1|scaffold_2618 (12991-13149) | |
| 12-163, gnl|echTel1|scaffold_238193 (11019-10860) | |
| 12-163, gnl|fr1|chrUn (2688529-2688370) | |
| 12-163, gnl|galGal2|chr5 (54647583-54647738) | |
| 12-163, gnl|hg17|chr14 (50448616-50448775) | |
| 12-163, gnl|Hg17|chr14 (50448774-50448623) | |
| 12-163, gnl|loxAfr1|scaffold_10379 (45721-45880) | |
| 12-163, gnl|mm7|chr12 (68138383-68138541) | |
| 12-163, gnl|Mm7|chr12 (68138540-68138389) | |
| 12-163, gnl|monDom2|scaffold_73 (7127000-7127159) | |
| 12-163, gnl|oryCun1|scaffold_122700 (3918-3742) | |
| 12-163, gnl|panTro1|chr15 (49867925-49868084) | |
| 12-163, gnl|rheMac2|chr7 (113961703-113961862) | |
| 12-163, gnl|rn3|chr6 (92308709-92308867) | |
| 12-163, gnl|tetNig1|chr10 (11257154-11256995) | |
| 12-163, gnl|xenTro1|scaffold_341 (979355-979197) | |
| 362-573, gnl|bosTau2|chr10 (29321872-29321661) | |
| 362-573, gnl|Hg17|chr14 (50446572-50446361) | |
| 362-573, gnl|Mm7|chr12 (68136705-68136494) | |
| 772-1182, gnl|bosTau2|chr29 (33897200-33896787) | |
| 772-1182, gnl|Hg17|chr11 (64270858-64270446) | |
| 772-1182, gnl|Mm7|chr19 (6292746-6293153) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-163, gnl|bosTau2|chr10 (29325031-29324880) | |
| 12-163, gnl|canFam2|chr8 (30285518-30285677) | |
| 12-163, gnl|danRer3|chr13 (39522512-39522671) | |
| 12-163, gnl|dasNov1|scaffold_2618 (12991-13149) | |
| 12-163, gnl|echTel1|scaffold_238193 (11019-10860) | |
| 12-163, gnl|fr1|chrUn (2688529-2688370) | |
| 12-163, gnl|galGal2|chr5 (54647583-54647738) | |
| 12-163, gnl|hg17|chr14 (50448616-50448775) | |
| 12-163, gnl|Hg17|chr14 (50448774-50448623) | |
| 12-163, gnl|loxAfr1|scaffold_10379 (45721-45880) | |
| 12-163, gnl|mm7|chr12 (68138383-68138541) | |
| 12-163, gnl|Mm7|chr12 (68138540-68138389) | |
| 12-163, gnl|monDom2|scaffold_73 (7127000-7127159) | |
| 12-163, gnl|oryCun1|scaffold_122700 (3918-3742) | |
| 12-163, gnl|panTro1|chr15 (49867925-49868084) | |
| 12-163, gnl|rheMac2|chr7 (113961703-113961862) | |
| 12-163, gnl|rn3|chr6 (92308709-92308867) | |
| 12-163, gnl|tetNig1|chr10 (11257154-11256995) | |
| 12-163, gnl|xenTro1|scaffold_341 (979355-979197) | |
| 362-573, gnl|bosTau2|chr10 (29321872-29321661) | |
| 362-573, gnl|Hg17|chr14 (50446572-50446361) | |
| 362-573, gnl|Mm7|chr12 (68136705-68136494) | |
| 772-1182, gnl|bosTau2|chr29 (33897200-33896787) | |
| 772-1182, gnl|Hg17|chr11 (64270858-64270446) | |
| 772-1182, gnl|Mm7|chr19 (6292746-6293153) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| ton (1.5795) | |
| nms (1.28315) | |
| mas (1.05152) | |
| sme (0.91631) | |
| ldo (0.679018) | |
| fcc (0.593354) | |
| nca (0.273748) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (1.5795) | |
| nms (1.28315) | |
| mas (1.05152) | |
| sme (0.91631) | |
| ldo (0.679018) | |
| fcc (0.593354) | |
| nca (0.273748) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) |