Non-Coding RNA Search

Ss1.1-Mixn-0002h13.5

Sequence:


               
               CGGTCCGGCAGCTGAAGCTCGGCGCTTGGGTTACCCCTGCAGCGACGCCCCCTGGTCCCA
CCGGTCTCTCTACTGCTCCCGCCCCTTCGCTCCTCCGCCTGGCCATGGGCACCCGCGACG
ACGAGTACGACTACCTCTTCAAAGTTGTCCTTATTGGAGATTCTGGTGTTGGAAAGAGTA
ATCTCCTGTCTCGATTTACTCGAAATGAGTTTAATCTTGAAAGCAAGAGCACCATTGGCG
TAGAGTTTGCAACAAGAAGCATCCAGGTTGATGGGAAAACAATAAAGGCACAGATATGGG
ACACAGCAGGGCAAGAGCGATACCGAGCTATAACATCAGCATACTATCGTGGAGCTGTAG
GTGCCTTATTGGTTTATGACATTGCTAAACATCTCACATATGAAAATGTGGAACGATGGC
TGAAAGAACTGAGAGATCATGCTGATAGTAACATTGTTATCATGCTTGTGGGCAATAAGA
GTGATTTGCGTCATCTCAGGGCAGTTCCTACAGATGAAGCAAGAGCTTTTGCAGAAAAGA
ATGGTTTGTCATTCATTGAGACATCTGCTTTAGACTCTACAAATGTAGAAGCTGCTTTTC
AGACAATCTTGACAGAGATATACCGCATTGTTTCCCAGAAGCAAATGTCAGACAGACGTG
AAAATGACATGTCTCCAAGCAACAATGTGGTTCCTATTCATGTTCCACCAACCACTGAAA
ACAAGCCAAAGGTGCAGTGCTGTCAGAACATATAAGGATTTTCTTTTCTCCCCTAGAAGA
ATGTGTATAGTTCAATTCCCAGGTCTGAGATTTAAATATATTTGTAATTCTTGTGGTCAT
TTTTGTTTTATTACTTCCTCATACTTATGAATTTTTCCATGTCTTAAGTCTTTTGATTTT
AGCTTTATAAAATCATCCACTTGTCCCAAATGACTGCAGCTTTTTTTCATGCTATGGCTT
CACTAGCCTTAGTTTAATAAACTGAATATTTGGATTCCTCAAAAAAAATTTACTTTTCAT
CATGGAAGCTGTCACTGTAGGACATAATAGAACTTGATCCCTTGAAGCTTAGACCTATCG
GTCTTGATTAAATCAAACTAAGAAGACTCTGGAAATAAGCTATTATTTTGCCACGGAGCA
GCTTATAATTAACACACTCTTCTCTCACTTGCAGTGTGTATTTCCATGAATCTAAGAATT
GCCCTATAAACATAGCAGAATTTTGAGAGCTTGAAAATTTTCCATTATTCTGGAAGTCAA
TTTCTAAAATGCCTTAATAGGGTTATGTAGTTTAGTAAATTTTATTTTTTAATTTTTGTA
AACATCAAAGTTGACTAGAGAGGGGGGACACTTTTTTTCTGGATAAGAATTATCTTAACA
CAAAAGACTGATGATTTCAGTAGCAGTATGGTTGTGGGGCCATATGTTAAAACAGTACTG
CCTGGCAGGCTGGGAACTGGAGAGACTGGTGGAATTCCATCCTGAGGTGCCTTTATTACA
GTGATCAGGCAGCCCAAGTCATTTAACTTATCTAATTTCCCAGCAGTAGATCATGTGGCA
TTTTATTGCTCAGGCAATAACTGGTTTAATGCTTAGTATCTGATGGTGAAGTGTTAATTT
TGTTTTAAAACTTTCCAGTAAATGAAATGCAACCTAGTTTTATCACCATATCTACCAGCA
GGCATGGATAATTATTTAATTAAGGCTGATTTTTTTAGTTTTGCAGTATATTACGGAATA
TAGTCCAGTTAAATATCTGGTTTCAGTTTGTCTAAAGAATACAATGAGAGGTTAATTTCT
GCTCAAGTGGTACCACTTAAAGGCATGTATTCTTTTAGTACGTAAGTTGAAATAGTACCT
TGAATTAAATAGTACCTTGAATTTAAATAGAATGCATTTAGGCATTGTACAAACCTGAAA
GTTTTCTTCCACTACATTATTGAAATCAATGGAGCAACTTGTTTCTCATTCACAAATGTG
CACACTAATATTTAGTTTTATTTTCTTGTGGATAATATTAAGCACTTAACTCTGCAGTGT
TCTGAAAGTTGTGTCAACTGAAGTGATACTATTCAGGATGGTGGAATATCCCCAAAATAT
ACATGTGTGTGGGCTTGCATAGATTACTATGTTTCATAGTTAATCTTCTGTCTTTTGCGG
TGCTCATGACGTGTGGGGTGCACGGAAGGCATTGCCTTGGTCAGTCATTTTAGTTTTCTT
CTGTAGCCATTTTATTATTTTAGTGTATTGGTTATGAAGATACTACTCTCTATTTGTAAA
TCGCTACTTTGTATTTTATGCATGCTCTGTAACTTGATTTTTTTTTTAGTTATTGATTTG
GAATATATTCACATTCTAATAAACAGTTATAGGGGGACTATTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTCCGGCAGCTGAAGCTCGGCGCTTGGGTTACCCCTGCAGCGACGCCCCCTGGTCCCA
CCGGTCTCTCTACTGCTCCCGCCCCTTCGCTCCTCCGCCTGGCCATGGGCACCCGCGACG
ACGAGTACGACTACCTCTTCAAAGTTGTCCTTATTGGAGATTCTGGTGTTGGAAAGAGTA
ATCTCCTGTCTCGATTTACTCGAAATGAGTTTAATCTTGAAAGCAAGAGCACCATTGGCG
TAGAGTTTGCAACAAGAAGCATCCAGGTTGATGGGAAAACAATAAAGGCACAGATATGGG
ACACAGCAGGGCAAGAGCGATACCGAGCTATAACATCAGCATACTATCGTGGAGCTGTAG
GTGCCTTATTGGTTTATGACATTGCTAAACATCTCACATATGAAAATGTGGAACGATGGC
TGAAAGAACTGAGAGATCATGCTGATAGTAACATTGTTATCATGCTTGTGGGCAATAAGA
GTGATTTGCGTCATCTCAGGGCAGTTCCTACAGATGAAGCAAGAGCTTTTGCAGAAAAGA
ATGGTTTGTCATTCATTGAGACATCTGCTTTAGACTCTACAAATGTAGAAGCTGCTTTTC
AGACAATCTTGACAGAGATATACCGCATTGTTTCCCAGAAGCAAATGTCAGACAGACGTG
AAAATGACATGTCTCCAAGCAACAATGTGGTTCCTATTCATGTTCCACCAACCACTGAAA
ACAAGCCAAAGGTGCAGTGCTGTCAGAACATATAAGGATTTTCTTTTCTCCCCTAGAAGA
ATGTGTATAGTTCAATTCCCAGGTCTGAGATTTAAATATATTTGTAATTCTTGTGGTCAT
TTTTGTTTTATTACTTCCTCATACTTATGAATTTTTCCATGTCTTAAGTCTTTTGATTTT
AGCTTTATAAAATCATCCACTTGTCCCAAATGACTGCAGCTTTTTTTCATGCTATGGCTT
CACTAGCCTTAGTTTAATAAACTGAATATTTGGATTCCTCAAAAAAAATTTACTTTTCAT
CATGGAAGCTGTCACTGTAGGACATAATAGAACTTGATCCCTTGAAGCTTAGACCTATCG
GTCTTGATTAAATCAAACTAAGAAGACTCTGGAAATAAGCTATTATTTTGCCACGGAGCA
GCTTATAATTAACACACTCTTCTCTCACTTGCAGTGTGTATTTCCATGAATCTAAGAATT
GCCCTATAAACATAGCAGAATTTTGAGAGCTTGAAAATTTTCCATTATTCTGGAAGTCAA
TTTCTAAAATGCCTTAATAGGGTTATGTAGTTTAGTAAATTTTATTTTTTAATTTTTGTA
AACATCAAAGTTGACTAGAGAGGGGGGACACTTTTTTTCTGGATAAGAATTATCTTAACA
CAAAAGACTGATGATTTCAGTAGCAGTATGGTTGTGGGGCCATATGTTAAAACAGTACTG
CCTGGCAGGCTGGGAACTGGAGAGACTGGTGGAATTCCATCCTGAGGTGCCTTTATTACA
GTGATCAGGCAGCCCAAGTCATTTAACTTATCTAATTTCCCAGCAGTAGATCATGTGGCA
TTTTATTGCTCAGGCAATAACTGGTTTAATGCTTAGTATCTGATGGTGAAGTGTTAATTT
TGTTTTAAAACTTTCCAGTAAATGAAATGCAACCTAGTTTTATCACCATATCTACCAGCA
GGCATGGATAATTATTTAATTAAGGCTGATTTTTTTAGTTTTGCAGTATATTACGGAATA
TAGTCCAGTTAAATATCTGGTTTCAGTTTGTCTAAAGAATACAATGAGAGGTTAATTTCT
GCTCAAGTGGTACCACTTAAAGGCATGTATTCTTTTAGTACGTAAGTTGAAATAGTACCT
TGAATTAAATAGTACCTTGAATTTAAATAGAATGCATTTAGGCATTGTACAAACCTGAAA
GTTTTCTTCCACTACATTATTGAAATCAATGGAGCAACTTGTTTCTCATTCACAAATGTG
CACACTAATATTTAGTTTTATTTTCTTGTGGATAATATTAAGCACTTAACTCTGCAGTGT
TCTGAAAGTTGTGTCAACTGAAGTGATACTATTCAGGATGGTGGAATATCCCCAAAATAT
ACATGTGTGTGGGCTTGCATAGATTACTATGTTTCATAGTTAATCTTCTGTCTTTTGCGG
TGCTCATGACGTGTGGGGTGCACGGAAGGCATTGCCTTGGTCAGTCATTTTAGTTTTCTT
CTGTAGCCATTTTATTATTTTAGTGTATTGGTTATGAAGATACTACTCTCTATTTGTAAA
TCGCTACTTTGTATTTTATGCATGCTCTGTAACTTGATTTTTTTTTTAGTTATTGATTTG
GAATATATTCACATTCTAATAAACAGTTATAGGGGGACTATTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|15426487|gb|AAH13348.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|15426487|gb|AAH13348.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               880-1884, - strand, RNAz p=0.970362

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               880-1884, - strand, RNAz p=0.970362

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-1406, gnl|bosTau2|chr10 (7381061-7382471)
               

               
               2-1406, gnl|Hg17|chr10 (95631752-95629779)
               

               
               2-1406, gnl|Mm7|chr9 (64758079-64745836)
               


               
               1449-2400, gnl|bosTau2|chr10 (7382471-7383383)
               

               
               1449-2400, gnl|Hg17|chr10 (95629779-95628864)
               

               
               1449-2400, gnl|Mm7|chr9 (64745836-64744948)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1406, gnl|bosTau2|chr10 (7381061-7382471)
               

               
               2-1406, gnl|Hg17|chr10 (95631752-95629779)
               

               
               2-1406, gnl|Mm7|chr9 (64758079-64745836)
               


               
               1449-2400, gnl|bosTau2|chr10 (7382471-7383383)
               

               
               1449-2400, gnl|Hg17|chr10 (95629779-95628864)
               

               
               1449-2400, gnl|Mm7|chr9 (64745836-64744948)

Expressed library(ies): 54 entry(ies)

More info

Expressed library(ies): 54 entry(ies)

Help | Less info


               
               cbe (1.43541)
               

               
               ret (1.02987)
               

               
               spc (1.02029)
               

               
               liv (0.877706)
               

               
               sin (0.874738)
               

               
               lin (0.873617)
               

               
               lyg (0.798616)
               

               
               fco (0.78604)
               

               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               mgp (0.692042)
               

               
               fcc (0.593354)
               

               
               ill (0.526778)
               

               
               rec (0.519211)
               

               
               tra (0.492368)
               

               
               ebs (0.473205)
               

               
               isp (0.451128)
               

               
               spl (0.429553)
               

               
               hyp (0.42851)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               csk (0.281492)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.43541)
               

               
               ret (1.02987)
               

               
               spc (1.02029)
               

               
               liv (0.877706)
               

               
               sin (0.874738)
               

               
               lin (0.873617)
               

               
               lyg (0.798616)
               

               
               fco (0.78604)
               

               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               mgp (0.692042)
               

               
               fcc (0.593354)
               

               
               ill (0.526778)
               

               
               rec (0.519211)
               

               
               tra (0.492368)
               

               
               ebs (0.473205)
               

               
               isp (0.451128)
               

               
               spl (0.429553)
               

               
               hyp (0.42851)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               csk (0.281492)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	2-1406, gnl\|bosTau2\|chr10 (7381061-7382471)
	2-1406, gnl\|Hg17\|chr10 (95631752-95629779)
	2-1406, gnl\|Mm7\|chr9 (64758079-64745836)

	1449-2400, gnl\|bosTau2\|chr10 (7382471-7383383)
	1449-2400, gnl\|Hg17\|chr10 (95629779-95628864)
	1449-2400, gnl\|Mm7\|chr9 (64745836-64744948)

	cbe (1.43541)
	ret (1.02987)
	spc (1.02029)
	liv (0.877706)
	sin (0.874738)
	lin (0.873617)
	lyg (0.798616)
	fco (0.78604)
	ski (0.733676)
	gul (0.710353)
	mgp (0.692042)
	fcc (0.593354)
	ill (0.526778)
	rec (0.519211)
	tra (0.492368)
	ebs (0.473205)
	isp (0.451128)
	spl (0.429553)
	hyp (0.42851)
	cst (0.420109)
	hea (0.408998)
	pla (0.401016)
	nmm (0.398406)
	col (0.390016)
	sug (0.381874)
	sag (0.36543)
	mgm (0.360685)
	duo (0.345602)
	nje (0.33184)
	nco (0.323468)
	csk (0.281492)
	ute (0.265569)
	kid (0.259471)
	bla (0.248694)
	cbl (0.229595)
	aor (0.195274)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	mcp (0.170648)
	cje (0.165235)
	mga (0.160205)
	tbr (0.154178)
	bfe (0.149858)
	pty (0.142714)
	ste (0.135208)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	jej (0.0989218)
	ldo (0.0970026)