Non-Coding RNA Search

Ss1.1-Mixn-0002j17.5

Sequence:


               
               GCTAGACATGCAAAGGAAAGCACAGGCTCCCATAGCATGCCTGGAGTCAGGCTGCACTGG
GATGGCGCCCAGGCCTCCTCCTGCCCAGTGCATTCTCTGGTCTATCCTGATGTCCCTGCC
ATTCTTTGGTTCTTCACTTTTTTTGACTATCAAGACCACCCTTCAGGCCTTTCCTGCCTT
CTGCGATTCTCTCCACCATCTCATCTGACCTTTAAGTCCTGCCTGCCCACCTCAGCCTGC
CTGAACTCCTGCTCTGTGACTGGATACCTGCCTGAGCTCCCAACGCTCTCCAATATCCCC
AGCAAGCTGATGCCAGCTCTGCCTAACAACCTCTGTCCTGCTACAGCCCACACCGTGGCA
CGGCACCAAGGCATGTGGGGCCCTATCTTCCCAGCATGTGGGAGAGTTACACAGACAACC
ACATTGATGCCAAGAAGGCCCACGGCAGACTCCCAGAGTCCTGGGACAGCCAAGACTAAA
ATGGCAGCCAGTTCCCAGGCGCTAGGGGTTCCTGGGAGCTCACACTACCCTCCTCCACCT
CCTGCAGTCCCTGTCTGCTCAAAGTCCTGGGTTTGGCATCAAACCCCCATCCTTGGAAAC
TTAGATTCAGTTACAAGCACACAGTCATCAATTAAACAAAAGTAATATCTGATAAGGGTT
ATTTCCTCTATGCAGAGACAAAAGAATGGATTTGGGAGCTGGGGGTGGCATTGGCAATGA
GTAGGAAGATGATGTTCAGTATAATTGCTTATCCAGTGTATCAGGAAAGACTTAGATGAA
ATGGGATTTCAAGATCCATCTGAATTTAATACGTTGTCCTTATCCCTCCTGGAAATAAAA
TGCTTTCATTCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGACATGCAAAGGAAAGCACAGGCTCCCATAGCATGCCTGGAGTCAGGCTGCACTGG
GATGGCGCCCAGGCCTCCTCCTGCCCAGTGCATTCTCTGGTCTATCCTGATGTCCCTGCC
ATTCTTTGGTTCTTCACTTTTTTTGACTATCAAGACCACCCTTCAGGCCTTTCCTGCCTT
CTGCGATTCTCTCCACCATCTCATCTGACCTTTAAGTCCTGCCTGCCCACCTCAGCCTGC
CTGAACTCCTGCTCTGTGACTGGATACCTGCCTGAGCTCCCAACGCTCTCCAATATCCCC
AGCAAGCTGATGCCAGCTCTGCCTAACAACCTCTGTCCTGCTACAGCCCACACCGTGGCA
CGGCACCAAGGCATGTGGGGCCCTATCTTCCCAGCATGTGGGAGAGTTACACAGACAACC
ACATTGATGCCAAGAAGGCCCACGGCAGACTCCCAGAGTCCTGGGACAGCCAAGACTAAA
ATGGCAGCCAGTTCCCAGGCGCTAGGGGTTCCTGGGAGCTCACACTACCCTCCTCCACCT
CCTGCAGTCCCTGTCTGCTCAAAGTCCTGGGTTTGGCATCAAACCCCCATCCTTGGAAAC
TTAGATTCAGTTACAAGCACACAGTCATCAATTAAACAAAAGTAATATCTGATAAGGGTT
ATTTCCTCTATGCAGAGACAAAAGAATGGATTTGGGAGCTGGGGGTGGCATTGGCAATGA
GTAGGAAGATGATGTTCAGTATAATTGCTTATCCAGTGTATCAGGAAAGACTTAGATGAA
ATGGGATTTCAAGATCCATCTGAATTTAATACGTTGTCCTTATCCCTCCTGGAAATAAAA
TGCTTTCATTCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               431-547, - strand, RNAz p=0.625765

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-547, - strand, RNAz p=0.625765

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-853, gnl|bosTau2|chr22 (45630594-45629740)
               

               
               1-853, gnl|Hg17|chr3 (12166090-12165231)
               

               
               1-853, gnl|Mm7|chr6 (115268112-115267297)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-853, gnl|bosTau2|chr22 (45630594-45629740)
               

               
               1-853, gnl|Hg17|chr3 (12166090-12165231)
               

               
               1-853, gnl|Mm7|chr6 (115268112-115267297)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               ute (0.132784)

	1-853, gnl\|bosTau2\|chr22 (45630594-45629740)
	1-853, gnl\|Hg17\|chr3 (12166090-12165231)
	1-853, gnl\|Mm7\|chr6 (115268112-115267297)