Non-Coding RNA Search

Ss1.1-Mixn-0002l11.5

Sequence:


               
               AATATACTACAGAATGTTTTGTCAGCTTTTCATATAATGTTTCAATGAAGATAAGCTTAA
ACTGTATGTGCCCCTCATGGCAATAAAATCCCGATCTTCAAGCATGAACCTAAAGTGTAA
ATATTTATATTCAGAGATTCTTAACTTTACAAAATTTCTCAAATAGTACATATTTGAATT
ACAAGTAACCTTTTAGGAATACCTCTTTGTATATCTAAATATTTTAGTATATAAAAATAG
GTAATACTCTTGGACACTTTGTATTCATTATCTGAATAGTAGTTTCAAGATCATGTGTAA
TATTATAATTAACTATCATGAAGTGTAAAGACTTGATACCTTTTCTGCTCTTTCAGATAA
CTCTGAGGTTATCTGTAACACTCAAGGTACTTTTTTAGACTTTTAAAAAGTTGAAATTTA
GTCCTGGATGTATTTTTTTTTTTTTGATAGGAAAACATCGAGATGTCCTTTTCTTACTTT
TACCTAGAATGCCTGTTTACAAGTGCCTTGAAAAAAACATAGTTCCCTGTCTTCATTAAC
ACCTGTAAAACTGAAGGTTTTCTTGAACTTAAGAGAAAATTTTAAAGGAGTCTGCAGCCA
GCTGCTTCATTTCAACTTTGCTGTTTTTCAGAGTAATTCATACCTGTGAATAGAGGAAGG
CTTTTGTGTTTATTGACAACATGCTTAATGTTTCCCTAAATATGTCAGCAAACTTTTAAA
TACTGTATTTATCATCTTTTTTAGGACTTCTTTCTTAAATTTTAAAATATAATATTTCTT
ATTGGAAGAATAATTTCTTGAACCATGTTATGTTTTAACTGATTTTTCTTATCTCTATTT
TGCTCAGTAGAAATTATCCCTAAATGTAATGGTTTTATATTCAAATTTTATTTAATTTTT
CTGGCTTATGAAGGAGTTAGAAGAAAGCATTCACTTAAAAGATTCCATTTCCAGTTCTAT
AGTGTATTTCAGGTTTTAAATAATCACATTTTTCCAAATTAAAAGAATTTGGAAATTCTT
TTCCATTTCCCAATTTCAGTCAAATTTGGGAAACTGATAGCCCCACTAAAATTTACTCCT
TCTAATACCAATCTAAGCACAATTCACTTCTATATTGATGCTGTGCTTAAAAAAATTAAT
CAAAAATTTATACTTAGATCAAAAAAATTAAATCAGTAGATATTATAAAAGCCATATATA
TAAAGGTTTCTTTCCTTTAGTAAGACATGAACTTGCTTATTGGTTTTTCTGTCCCCCCCC
CCATAACATCTGATTATTAACCGAAACTGTACTCACAACTGTGGCACCAAAACAAATGAT
AATTCAAATACAATAAGTCTTTATTTACATAGATTCTGTAAGAGAAGTCTTTATTTATAA
ATGCAATTTCTAAAGTTTTAGAAAACAAAATTGATAAAATGTTAGACTCTTTGAACAGTT
ATTTATAAATCAGAATAGCATCAAAATGGAGAAAATAAACTAAGACTTCTGAAGAATGAG
GTAAATATAAATAAGCCAAAGATTTAAAGCTTTTTATGAAAGCTTCTTTGAAGATTTTTA
AATCTATTCTCCATTCCCAAGAGTTTGTTTGTTATATTTTACATGATCTACAACTCTTAA
AGTTTTGTATTGTTTCTTTGGTTTTCCCTATAAACAAAAAAGTATTTTAATAAAAAATTG
AAATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATACTACAGAATGTTTTGTCAGCTTTTCATATAATGTTTCAATGAAGATAAGCTTAA
ACTGTATGTGCCCCTCATGGCAATAAAATCCCGATCTTCAAGCATGAACCTAAAGTGTAA
ATATTTATATTCAGAGATTCTTAACTTTACAAAATTTCTCAAATAGTACATATTTGAATT
ACAAGTAACCTTTTAGGAATACCTCTTTGTATATCTAAATATTTTAGTATATAAAAATAG
GTAATACTCTTGGACACTTTGTATTCATTATCTGAATAGTAGTTTCAAGATCATGTGTAA
TATTATAATTAACTATCATGAAGTGTAAAGACTTGATACCTTTTCTGCTCTTTCAGATAA
CTCTGAGGTTATCTGTAACACTCAAGGTACTTTTTTAGACTTTTAAAAAGTTGAAATTTA
GTCCTGGATGTATTTTTTTTTTTTTGATAGGAAAACATCGAGATGTCCTTTTCTTACTTT
TACCTAGAATGCCTGTTTACAAGTGCCTTGAAAAAAACATAGTTCCCTGTCTTCATTAAC
ACCTGTAAAACTGAAGGTTTTCTTGAACTTAAGAGAAAATTTTAAAGGAGTCTGCAGCCA
GCTGCTTCATTTCAACTTTGCTGTTTTTCAGAGTAATTCATACCTGTGAATAGAGGAAGG
CTTTTGTGTTTATTGACAACATGCTTAATGTTTCCCTAAATATGTCAGCAAACTTTTAAA
TACTGTATTTATCATCTTTTTTAGGACTTCTTTCTTAAATTTTAAAATATAATATTTCTT
ATTGGAAGAATAATTTCTTGAACCATGTTATGTTTTAACTGATTTTTCTTATCTCTATTT
TGCTCAGTAGAAATTATCCCTAAATGTAATGGTTTTATATTCAAATTTTATTTAATTTTT
CTGGCTTATGAAGGAGTTAGAAGAAAGCATTCACTTAAAAGATTCCATTTCCAGTTCTAT
AGTGTATTTCAGGTTTTAAATAATCACATTTTTCCAAATTAAAAGAATTTGGAAATTCTT
TTCCATTTCCCAATTTCAGTCAAATTTGGGAAACTGATAGCCCCACTAAAATTTACTCCT
TCTAATACCAATCTAAGCACAATTCACTTCTATATTGATGCTGTGCTTAAAAAAATTAAT
CAAAAATTTATACTTAGATCAAAAAAATTAAATCAGTAGATATTATAAAAGCCATATATA
TAAAGGTTTCTTTCCTTTAGTAAGACATGAACTTGCTTATTGGTTTTTCTGTCCCCCCCC
CCATAACATCTGATTATTAACCGAAACTGTACTCACAACTGTGGCACCAAAACAAATGAT
AATTCAAATACAATAAGTCTTTATTTACATAGATTCTGTAAGAGAAGTCTTTATTTATAA
ATGCAATTTCTAAAGTTTTAGAAAACAAAATTGATAAAATGTTAGACTCTTTGAACAGTT
ATTTATAAATCAGAATAGCATCAAAATGGAGAAAATAAACTAAGACTTCTGAAGAATGAG
GTAAATATAAATAAGCCAAAGATTTAAAGCTTTTTATGAAAGCTTCTTTGAAGATTTTTA
AATCTATTCTCCATTCCCAAGAGTTTGTTTGTTATATTTTACATGATCTACAACTCTTAA
AGTTTTGTATTGTTTCTTTGGTTTTCCCTATAAACAAAAAAGTATTTTAATAAAAAATTG
AAATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               38-1008, gnl|bosTau2|chr24 (31836233-31835283)
               

               
               38-1008, gnl|Hg17|chr18 (9390766-9391738)
               

               
               38-1008, gnl|Mm7|chr17 (64142510-64141379)
               


               
               1078-1685, gnl|bosTau2|chr24 (31835255-31834646)
               

               
               1078-1685, gnl|Hg17|chr18 (9391776-9392417)
               

               
               1078-1685, gnl|Mm7|chr17 (64141342-64140604)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-1008, gnl|bosTau2|chr24 (31836233-31835283)
               

               
               38-1008, gnl|Hg17|chr18 (9390766-9391738)
               

               
               38-1008, gnl|Mm7|chr17 (64142510-64141379)
               


               
               1078-1685, gnl|bosTau2|chr24 (31835255-31834646)
               

               
               1078-1685, gnl|Hg17|chr18 (9391776-9392417)
               

               
               1078-1685, gnl|Mm7|chr17 (64141342-64140604)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               kid (0.908147)
               

               
               mgp (0.692042)
               

               
               fat (0.442282)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               mgp (0.692042)
               

               
               fat (0.442282)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	38-1008, gnl\|bosTau2\|chr24 (31836233-31835283)
	38-1008, gnl\|Hg17\|chr18 (9390766-9391738)
	38-1008, gnl\|Mm7\|chr17 (64142510-64141379)

	1078-1685, gnl\|bosTau2\|chr24 (31835255-31834646)
	1078-1685, gnl\|Hg17\|chr18 (9391776-9392417)
	1078-1685, gnl\|Mm7\|chr17 (64141342-64140604)

	kid (0.908147)
	mgp (0.692042)
	fat (0.442282)
	mga (0.32041)
	isp (0.300752)
	bfe (0.299715)
	fce (0.271592)
	tra (0.246184)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	nmm (0.132802)
	ret (0.128733)
	thg (0.126791)
	eru (0.120048)
	cty (0.10408)
	ldo (0.0970026)