Non-Coding RNA Search

Ss1.1-Mixn-0002p03.5

Sequence:


               
               TTTTTTTTTTCAAATTTCAAAGCTACTTAGTTGTTATCTCAGATTCACTCTGAGAACTCC
CCAACACAGGGCAGTGTTAAAAGATGAAAAATGCATTATCTAAATAAAGTGGGGTAGCCC
CAAAGGATCATCTGCACAGAAAATGAATGTGTCTGTGGGACATTTATTATGCCAAAGAAG
ATTCACACTCCATGCTTTAGAGAGCTTTTTGCAGTTGACACCTTTTGTCTGTAGAAGCAA
GTTGTCTTTGTAAAATGGATTCACTCTCTGCTTGAAGCTCCCCAGGTCAGACTGTCAGAC
AATAGATGTATTGAACTGAAGTACACGCTTACTGGCTGTGCAAACCTTTACTCTGGCATA
ATGTCACTTGAAAATATGCTATTCAAAGATTCACATGTAAACTAAGTAAGAAAGAGAATT
TTGATTAACATTGACACCTGTCACTGGAGGAAGATAAAATTTTAGGCATGAGATAATCCT
ATATTTCTGCTGTATCCCCAAGTCTCTATGTTGGTTTTTTTGGCGCCACTTCTCCTATGG
AGAAATCTAGCTTACTACTGAGAGAACTGTGCATAGAACACAGTGTCTAGTTTTAATAGT
TATTAATGTGTCTGTCTTATTGTTTATGCAGCTGCATTTCCCTTGAGCCTAAGAAGCAAT
TCAACCAACTTCTAGGAGCCTGAGAGGGAGAAACTCAATAGAAAGCAAGAGCCACTTACA
AATGATTTCTTTAATGGGGTACCTGCAATGCATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCAAATTTCAAAGCTACTTAGTTGTTATCTCAGATTCACTCTGAGAACTCC
CCAACACAGGGCAGTGTTAAAAGATGAAAAATGCATTATCTAAATAAAGTGGGGTAGCCC
CAAAGGATCATCTGCACAGAAAATGAATGTGTCTGTGGGACATTTATTATGCCAAAGAAG
ATTCACACTCCATGCTTTAGAGAGCTTTTTGCAGTTGACACCTTTTGTCTGTAGAAGCAA
GTTGTCTTTGTAAAATGGATTCACTCTCTGCTTGAAGCTCCCCAGGTCAGACTGTCAGAC
AATAGATGTATTGAACTGAAGTACACGCTTACTGGCTGTGCAAACCTTTACTCTGGCATA
ATGTCACTTGAAAATATGCTATTCAAAGATTCACATGTAAACTAAGTAAGAAAGAGAATT
TTGATTAACATTGACACCTGTCACTGGAGGAAGATAAAATTTTAGGCATGAGATAATCCT
ATATTTCTGCTGTATCCCCAAGTCTCTATGTTGGTTTTTTTGGCGCCACTTCTCCTATGG
AGAAATCTAGCTTACTACTGAGAGAACTGTGCATAGAACACAGTGTCTAGTTTTAATAGT
TATTAATGTGTCTGTCTTATTGTTTATGCAGCTGCATTTCCCTTGAGCCTAAGAAGCAAT
TCAACCAACTTCTAGGAGCCTGAGAGGGAGAAACTCAATAGAAAGCAAGAGCCACTTACA
AATGATTTCTTTAATGGGGTACCTGCAATGCATGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               499-615, + strand, RNAz p=0.644293

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-615, + strand, RNAz p=0.644293

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-750, gnl|bosTau2|chr9 (6963541-6964271)
               

               
               8-750, gnl|Hg17|chr6 (78227097-78226384)
               

               
               8-750, gnl|Mm7|chr9 (81728052-81727323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-750, gnl|bosTau2|chr9 (6963541-6964271)
               

               
               8-750, gnl|Hg17|chr6 (78227097-78226384)
               

               
               8-750, gnl|Mm7|chr9 (81728052-81727323)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	8-750, gnl\|bosTau2\|chr9 (6963541-6964271)
	8-750, gnl\|Hg17\|chr6 (78227097-78226384)
	8-750, gnl\|Mm7\|chr9 (81728052-81727323)