Ss1.1-Mixn-0002p12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGTCCATCTTAAAGACACCCCTTCCCAAAAAGATTGCCAGATTATATTTGGTTTCTGAT GTGTTATACAACTCTTCAGCCAAAGTTGCCAATGCTTCCTATTATAGAAAATTTTTTGAA ACAAAGTTATGTCAGATATTTTCAGACCTCAATGCTACCTATCGTACAATTCAAGGCCAT TTACAGTCTGAAAACTTCAAGCAACGGGTAATGACCTGCTTTAGAGCGTGGGAAGATTGG GCAATTTATCCAGAACCATTTTTGATCAAACTACAAAATATTTTCTTAGGACTTGTAAAT ATTATTGAAGAAAAGGAAACAGAGGATGTACCAGATGACCTTGATGGTGCCCCCATTGAG GAAGAGCTTGATGGTGCACCTCTAGAAGATGTGGATGGAATTCCTATTGATGCTACTCCC ATTGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATGATCTTGATGGAGTGCCT TTGGATGCAACTGAAGACTCAAAGAAGAATGAGCCTATATTTAAAGTTGCCCCGTCAAAA TGGGAAGCTGTAGATGAATCTGAATTGGAAGCACAGGCTGTAACAACTTCTAAATGGGAG TTATTTGACCAGCATGAAGAATCAGAAGAAGAAGAAAATCAAAATCAAGAAGAAGAAAGT GAAGATGAAGAAGATACTCAAAGTTCCAAATCTGAAGAACATCATTTGTACTCTAATCCA ATCAAAGAAGAAATGACTGAGTCCAAGTTCTCAAAGTACTCTGAAATGAGTGAGGAAAAA CGAGCTAAACTCCGTGAAATTGAGCTCAAAGTTATGAAGTTTCAGGATGAATTGGAATCT GGAAAAAGACCCAAAAAACCAGGCCAGAGCTTTCAGGAGCAAGTAGAACACTACAGAGAT AAACTTCTTCAACGGGAGAAAGAGAAAGAATTAGAAAGAGAACGAGAAAGAGATAAGAAG GATAAAGAAAAATTGGAATCTCGATCCAAAGACAAGAAAGAAAAAGATGAGTGTACTCCA ACAAGAAAAGAAAGGAAAAGGCGACACAGTACGTCCCCTAGCCCATCTCGCAGTAGCAGT GGTAGACGAGTGAAATCCCCATCACCAAAATCGGAGCGATCAGAGCGTTCAGAAAGATCT CATAAAGAGAGCTCACGGTCCAGGTCATCTCACAAAGATTCTCCTAGAGATGTTAGCAAA AAGGCCAAAAGATCACCATCTGGTTCAAGGACACCTAAAAGGTCTAGGCGATCACGGTCT AGATCCCCTAAAAAATCAGGGAAGAAATCCAGATCCCAGTCCCGATCTCCACACAGGTCT CATAAAAAGTCAAAGAAAAACAAACACTGACATAAATTTTTAAGATGCTGTCATTTATTG AAAATGCGATTTTGTTTTGTGCCTGAACAGTCTGTTTTTTAAAAAAACAAAAAACAAAAA ATCTAATGAAAGAGCATTCCTGGGGTTTTTATTTGTTTGTGAATGCATGTGTAAACTCAT AAGTAACTGCATCTGTAGATCTGTCGTTGTTTTATATTGTATAAATTACTTCCGTTGTGG CTGTTTCTCAAGATGAAATTTTTATTGTGCTAATGAATTTCATCAGAAATGTGTATAATG GATCTGCTGGCAGTAGTGGTATTTTGTTTTAGGATGTTGTGACTTAGCAAAAAAAATAAT ACGGATGTCTTCCCCCTTTTGTAGCTTTGACAATTTGAATTAGATTTCAAATAAAATCTG AATAGAAAACTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGTCCATCTTAAAGACACCCCTTCCCAAAAAGATTGCCAGATTATATTTGGTTTCTGAT GTGTTATACAACTCTTCAGCCAAAGTTGCCAATGCTTCCTATTATAGAAAATTTTTTGAA ACAAAGTTATGTCAGATATTTTCAGACCTCAATGCTACCTATCGTACAATTCAAGGCCAT TTACAGTCTGAAAACTTCAAGCAACGGGTAATGACCTGCTTTAGAGCGTGGGAAGATTGG GCAATTTATCCAGAACCATTTTTGATCAAACTACAAAATATTTTCTTAGGACTTGTAAAT ATTATTGAAGAAAAGGAAACAGAGGATGTACCAGATGACCTTGATGGTGCCCCCATTGAG GAAGAGCTTGATGGTGCACCTCTAGAAGATGTGGATGGAATTCCTATTGATGCTACTCCC ATTGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATGATCTTGATGGAGTGCCT TTGGATGCAACTGAAGACTCAAAGAAGAATGAGCCTATATTTAAAGTTGCCCCGTCAAAA TGGGAAGCTGTAGATGAATCTGAATTGGAAGCACAGGCTGTAACAACTTCTAAATGGGAG TTATTTGACCAGCATGAAGAATCAGAAGAAGAAGAAAATCAAAATCAAGAAGAAGAAAGT GAAGATGAAGAAGATACTCAAAGTTCCAAATCTGAAGAACATCATTTGTACTCTAATCCA ATCAAAGAAGAAATGACTGAGTCCAAGTTCTCAAAGTACTCTGAAATGAGTGAGGAAAAA CGAGCTAAACTCCGTGAAATTGAGCTCAAAGTTATGAAGTTTCAGGATGAATTGGAATCT GGAAAAAGACCCAAAAAACCAGGCCAGAGCTTTCAGGAGCAAGTAGAACACTACAGAGAT AAACTTCTTCAACGGGAGAAAGAGAAAGAATTAGAAAGAGAACGAGAAAGAGATAAGAAG GATAAAGAAAAATTGGAATCTCGATCCAAAGACAAGAAAGAAAAAGATGAGTGTACTCCA ACAAGAAAAGAAAGGAAAAGGCGACACAGTACGTCCCCTAGCCCATCTCGCAGTAGCAGT GGTAGACGAGTGAAATCCCCATCACCAAAATCGGAGCGATCAGAGCGTTCAGAAAGATCT CATAAAGAGAGCTCACGGTCCAGGTCATCTCACAAAGATTCTCCTAGAGATGTTAGCAAA AAGGCCAAAAGATCACCATCTGGTTCAAGGACACCTAAAAGGTCTAGGCGATCACGGTCT AGATCCCCTAAAAAATCAGGGAAGAAATCCAGATCCCAGTCCCGATCTCCACACAGGTCT CATAAAAAGTCAAAGAAAAACAAACACTGACATAAATTTTTAAGATGCTGTCATTTATTG AAAATGCGATTTTGTTTTGTGCCTGAACAGTCTGTTTTTTAAAAAAACAAAAAACAAAAA ATCTAATGAAAGAGCATTCCTGGGGTTTTTATTTGTTTGTGAATGCATGTGTAAACTCAT AAGTAACTGCATCTGTAGATCTGTCGTTGTTTTATATTGTATAAATTACTTCCGTTGTGG CTGTTTCTCAAGATGAAATTTTTATTGTGCTAATGAATTTCATCAGAAATGTGTATAATG GATCTGCTGGCAGTAGTGGTATTTTGTTTTAGGATGTTGTGACTTAGCAAAAAAAATAAT ACGGATGTCTTCCCCCTTTTGTAGCTTTGACAATTTGAATTAGATTTCAAATAAAATCTG AATAGAAAACTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 640-1328, - strand, RNAz p=0.938351 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 640-1328, - strand, RNAz p=0.938351 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 323-481, gnl|bosTau2|chr1 (84555627-84555785) | |
| 323-481, gnl|canFam2|chr23 (41686299-41686457) | |
| 323-481, gnl|danRer3|chr2 (18088819-18088549) | |
| 323-481, gnl|dasNov1|scaffold_62287 (8913-8755) | |
| 323-481, gnl|echTel1|scaffold_157750 (1383-1541) | |
| 323-481, gnl|fr1|chrUn (118964780-118964511) | |
| 323-481, gnl|galGal2|chr9 (3015372-3015214) | |
| 323-481, gnl|hg17|chr3 (72904485-72904643) | |
| 323-481, gnl|Hg17|chr3 (144238717-144238875) | |
| 323-481, gnl|loxAfr1|scaffold_10327 (43882-44039) | |
| 323-481, gnl|mm7|chr9 (95122092-95121937) | |
| 323-481, gnl|Mm7|chr9 (95122094-95121936) | |
| 323-481, gnl|monDom2|scaffold_7 (61811390-61811548) | |
| 323-481, gnl|oryCun1|scaffold_185204 (3338-3183) | |
| 323-481, gnl|panTro1|chr2 (74873336-74873494) | |
| 323-481, gnl|rheMac2|chr2 (63443714-63443556) | |
| 323-481, gnl|rn3|chr4 (44550792-44550950) | |
| 323-481, gnl|tetNig1|chr6 (3760086-3760352) | |
| 323-481, gnl|xenTro1|scaffold_1211 (203752-203596) | |
| 640-804, gnl|bosTau2|chr1 (84562088-84562252) | |
| 640-804, gnl|Hg17|chr3 (144244652-144244816) | |
| 640-804, gnl|Mm7|chr9 (95118036-95117872) | |
| 911-1035, gnl|bosTau2|chr1 (84569565-84569689) | |
| 911-1035, gnl|Hg17|chr3 (144255211-144255335) | |
| 911-1035, gnl|Mm7|chr9 (95110313-95110191) | |
| 1210-1755, gnl|bosTau2|chr1 (84572195-84572739) | |
| 1210-1755, gnl|Hg17|chr3 (144257850-144258386) | |
| 1210-1755, gnl|Mm7|chr9 (95107374-95106803) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 323-481, gnl|bosTau2|chr1 (84555627-84555785) | |
| 323-481, gnl|canFam2|chr23 (41686299-41686457) | |
| 323-481, gnl|danRer3|chr2 (18088819-18088549) | |
| 323-481, gnl|dasNov1|scaffold_62287 (8913-8755) | |
| 323-481, gnl|echTel1|scaffold_157750 (1383-1541) | |
| 323-481, gnl|fr1|chrUn (118964780-118964511) | |
| 323-481, gnl|galGal2|chr9 (3015372-3015214) | |
| 323-481, gnl|hg17|chr3 (72904485-72904643) | |
| 323-481, gnl|Hg17|chr3 (144238717-144238875) | |
| 323-481, gnl|loxAfr1|scaffold_10327 (43882-44039) | |
| 323-481, gnl|mm7|chr9 (95122092-95121937) | |
| 323-481, gnl|Mm7|chr9 (95122094-95121936) | |
| 323-481, gnl|monDom2|scaffold_7 (61811390-61811548) | |
| 323-481, gnl|oryCun1|scaffold_185204 (3338-3183) | |
| 323-481, gnl|panTro1|chr2 (74873336-74873494) | |
| 323-481, gnl|rheMac2|chr2 (63443714-63443556) | |
| 323-481, gnl|rn3|chr4 (44550792-44550950) | |
| 323-481, gnl|tetNig1|chr6 (3760086-3760352) | |
| 323-481, gnl|xenTro1|scaffold_1211 (203752-203596) | |
| 640-804, gnl|bosTau2|chr1 (84562088-84562252) | |
| 640-804, gnl|Hg17|chr3 (144244652-144244816) | |
| 640-804, gnl|Mm7|chr9 (95118036-95117872) | |
| 911-1035, gnl|bosTau2|chr1 (84569565-84569689) | |
| 911-1035, gnl|Hg17|chr3 (144255211-144255335) | |
| 911-1035, gnl|Mm7|chr9 (95110313-95110191) | |
| 1210-1755, gnl|bosTau2|chr1 (84572195-84572739) | |
| 1210-1755, gnl|Hg17|chr3 (144257850-144258386) | |
| 1210-1755, gnl|Mm7|chr9 (95107374-95106803) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| lin (0.728014) | |
| aor (0.585823) | |
| rec (0.519211) | |
| tra (0.492368) | |
| spl (0.429553) | |
| lyg (0.399308) | |
| thg (0.380373) | |
| sag (0.36543) | |
| lun (0.300978) | |
| lnt (0.284616) | |
| ova (0.258264) | |
| ret (0.257467) | |
| pan (0.23596) | |
| gul (0.177588) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| sug (0.127291) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.728014) | |
| aor (0.585823) | |
| rec (0.519211) | |
| tra (0.492368) | |
| spl (0.429553) | |
| lyg (0.399308) | |
| thg (0.380373) | |
| sag (0.36543) | |
| lun (0.300978) | |
| lnt (0.284616) | |
| ova (0.258264) | |
| ret (0.257467) | |
| pan (0.23596) | |
| gul (0.177588) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| sug (0.127291) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |