Non-Coding RNA Search

Ss1.1-Mixn-0003b09.5

Sequence:


               
               CGTGGTGCACGGCGGCGCCATGGAGGCCGGCAACTTGGAGGTGATTTTTGACCGCGTGGG
GCACTTCGGCAGATACCAGATATTCCTCTATTTTATGTGTGCCTTCCAGAACATCTCTTG
TGGTATCCACTACTTGGCTTCTGTGTTCTTGTCAGTGTCCCCCCAACATGCCTGCAGGCC
CCCAGGCAATGTGAGTCAGGTTCTTTTCCAAGATATCTCTGGTGTGAGGTTGGAGGACAT
CTGGACCCGGTTTTCCGTAGGCCGCGAAGATCGCATCATAGTGCAATTACAGAACGGGGA
GATCTGGGAGCTCACGAGCTGTCACAGGTTCCGGAGGGATGACAAGTCGAGTTTGAACCA
TGATTATAATGGCCATAAGAGTAGCTTTCCTTGCCTGGATGGCTACATCTATGACAAGAG
CAAGTGGCGCAGCACTGTGGTGACTGAGTGGGACCTGGTGTGTAACCGAGAATGGTTCGG
AAGGCTGATCCAGCCCGTCTTTATGCTTGGAGTTCTGCTGGGAGCGGCAGTCTTCGGCTA
CCTTTCTGACAGGACTGGAAGGCGAGTTATCTTGTGGACCACAAGCATTGGGGTATTTCT
GTGTGGCATAGGAGTGGCATTCACATTTGATTATTACAGCTTCATGATTGCACGCTTTCT
TCTTGCTATGGTTGGAAGTGGCTATCTCGTGGTGGTGTTTGTCTATGTGACGGAATTTGT
TGGCATGAAGTCCCGGACGTGGGCATCCATTCACTTGCATTCCTTTTTCGCGTTTGGAAC
CATGGTGGTTGCTCTGACAGGCTACTTTGTCAGGACCTGGTGGATCTATCAGATAATTCT
CTCCATGGTGACCGTCCCCTTTGTCCTATGCTGTTGGATGCTCCCAGAGACACCCTTTTG
GCTTCTTTCAGAGGGAAGATATGAAGAAGCACAGAAAGTCATTGATAGGATGGCCAAGTG
GAATAGGACAAGATCCTTTAAGCTGTCAGAACTTTTATCCCTGGCTGGCAGTGGTCCTGC
TGGTACCAAGGCCTCACCAGTTGAGAAGCACAGCTTATCAGATCTCTTTTATGACTGCAG
TATTGGAACAAGGACACTTATTGTTTGGCTGATTTGGTTCACGGGGCTGTCTCGGGTTCT
ACTCCTTCTCCTTGAATTCTGTTAATTTGGGAGGCAATGAATATTTAAATTTCTTCCTCA
TGGGTATAGTGGAGATTCCTGCCTACATCTTTGTGTGCGTCGGGATGGATCGTTCGGGGA
GAAGATGCATTCTGGGTTTCTCCCTTCTCTCAAGTGCAGTGACCAATGGTGTGATTATGG
TGATCCCCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGTGCACGGCGGCGCCATGGAGGCCGGCAACTTGGAGGTGATTTTTGACCGCGTGGG
GCACTTCGGCAGATACCAGATATTCCTCTATTTTATGTGTGCCTTCCAGAACATCTCTTG
TGGTATCCACTACTTGGCTTCTGTGTTCTTGTCAGTGTCCCCCCAACATGCCTGCAGGCC
CCCAGGCAATGTGAGTCAGGTTCTTTTCCAAGATATCTCTGGTGTGAGGTTGGAGGACAT
CTGGACCCGGTTTTCCGTAGGCCGCGAAGATCGCATCATAGTGCAATTACAGAACGGGGA
GATCTGGGAGCTCACGAGCTGTCACAGGTTCCGGAGGGATGACAAGTCGAGTTTGAACCA
TGATTATAATGGCCATAAGAGTAGCTTTCCTTGCCTGGATGGCTACATCTATGACAAGAG
CAAGTGGCGCAGCACTGTGGTGACTGAGTGGGACCTGGTGTGTAACCGAGAATGGTTCGG
AAGGCTGATCCAGCCCGTCTTTATGCTTGGAGTTCTGCTGGGAGCGGCAGTCTTCGGCTA
CCTTTCTGACAGGACTGGAAGGCGAGTTATCTTGTGGACCACAAGCATTGGGGTATTTCT
GTGTGGCATAGGAGTGGCATTCACATTTGATTATTACAGCTTCATGATTGCACGCTTTCT
TCTTGCTATGGTTGGAAGTGGCTATCTCGTGGTGGTGTTTGTCTATGTGACGGAATTTGT
TGGCATGAAGTCCCGGACGTGGGCATCCATTCACTTGCATTCCTTTTTCGCGTTTGGAAC
CATGGTGGTTGCTCTGACAGGCTACTTTGTCAGGACCTGGTGGATCTATCAGATAATTCT
CTCCATGGTGACCGTCCCCTTTGTCCTATGCTGTTGGATGCTCCCAGAGACACCCTTTTG
GCTTCTTTCAGAGGGAAGATATGAAGAAGCACAGAAAGTCATTGATAGGATGGCCAAGTG
GAATAGGACAAGATCCTTTAAGCTGTCAGAACTTTTATCCCTGGCTGGCAGTGGTCCTGC
TGGTACCAAGGCCTCACCAGTTGAGAAGCACAGCTTATCAGATCTCTTTTATGACTGCAG
TATTGGAACAAGGACACTTATTGTTTGGCTGATTTGGTTCACGGGGCTGTCTCGGGTTCT
ACTCCTTCTCCTTGAATTCTGTTAATTTGGGAGGCAATGAATATTTAAATTTCTTCCTCA
TGGGTATAGTGGAGATTCCTGCCTACATCTTTGTGTGCGTCGGGATGGATCGTTCGGGGA
GAAGATGCATTCTGGGTTTCTCCCTTCTCTCAAGTGCAGTGACCAATGGTGTGATTATGG
TGATCCCCCAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96M90_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96M90_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               69-553, gnl|bosTau2|chr9 (22580720-22581204)
               

               
               69-553, gnl|Hg17|chr6 (110884917-110884433)
               

               
               69-553, gnl|Mm7|chr10 (40360795-40361279)
               


               
               654-1212, gnl|bosTau2|chr9 (22590230-22590783)
               

               
               654-1212, gnl|Hg17|chr6 (110870685-110870132)
               

               
               654-1212, gnl|Mm7|chr10 (40372020-40372570)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-553, gnl|bosTau2|chr9 (22580720-22581204)
               

               
               69-553, gnl|Hg17|chr6 (110884917-110884433)
               

               
               69-553, gnl|Mm7|chr10 (40360795-40361279)
               


               
               654-1212, gnl|bosTau2|chr9 (22590230-22590783)
               

               
               654-1212, gnl|Hg17|chr6 (110870685-110870132)
               

               
               654-1212, gnl|Mm7|chr10 (40372020-40372570)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ldo (0.0970026)

	69-553, gnl\|bosTau2\|chr9 (22580720-22581204)
	69-553, gnl\|Hg17\|chr6 (110884917-110884433)
	69-553, gnl\|Mm7\|chr10 (40360795-40361279)

	654-1212, gnl\|bosTau2\|chr9 (22590230-22590783)
	654-1212, gnl\|Hg17\|chr6 (110870685-110870132)
	654-1212, gnl\|Mm7\|chr10 (40372020-40372570)