Ss1.1-Mixn-0003b15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCCTCGTGGAGAAGACAGCGACATGGGGCAGTCCGGGCGGTCCCGGCACCAGAAGCG CGCGCGCGCCCAGGCACACCTCCGCAACCTCGAGGCCTATGCCGCGCAGCCACACTCGTT CGTGTTCGCTCGGGGCCGCGCTGGTCGCAGCGTCCGGCAGCTCAGTCTGGACTTGAGACG GGTCATGGAGCCGCTCACCGCCACCCGCCTGCAGATAAGAAAGAAAAATTCTCTGAAAGA TTGCGTGGCAGTGGCCGGGCCCCTTGGGGTCACACACTTCCTGATCTTGAGCAGAACAGA GACCAATATCTACTTTAAGCTGATGCGACTCCCAGGAGGCCCCACCTTAACCTTCAGGAT CAACAAGTACACATTGGTGCGTGATGTAGTCTCCTCGCTACGCCGGCACCGCATGCATGA GCAGCAGTTTGCCCATCCACCTCTCCTGGTGCTCAACAGCTTTGGTCCCCACGGCATGCA CGTGAAGCTCATGGCCACCATGTTCCAGAACCTGTTCCCCTCCATCAATGTGCACAAGGT GAACCTGAACACCATCAAGCGCTGCCTTCTCATCAACTACAACCCCGACTCCCAGGAGCT GGATTTCCGCCATTATAGCATCAAAGTTGTCCCTGTGGGTGCAAGTCGTGGGATGAAGAA GCTTCTCCAAGAGAAGTTCCCCAACATGAGTCGCTTGCAGGACATCAGTGAGCTGCTGGC CACGGGCGCAGGGCTGTCTGAGAGTGAGGCAGAGCCAGATGGCGAGCACAACATCACAGA GCTGCCCCAGGCTGTGGCAGGGCGTGGCAACATGCGGGCACAGCAGAGTGCAGTGAGGCT CACAGAGATCGGGCCTCGGATGACGCTGCAGCTCATCAAGATCCAGGAGGGTGTTGGAGA GGGGAACGTGCTGTTCCACAGTTTCGTGCACAAGACGGAGGAGGAGCTGCAGGCTATCCT GGCAGCCAAGGAGGAGAAGCTGCGGCTCAAGGCCCAGAGGCAGGACCAGCAGGCCCAGAA CATCCAGCGCAAGCGGGAACAGCGAGAGGCCCATAAAAAGAAGAGCCTGGCAGGCATGAA ACGGGCACGGGCAGAGGCCAACGGGGACAGCGATGCCGAGGACCCTGGCGCCCCCCCAGA GGCAGAGGGAGCCAGCCTTCGAGAGGAAGAGGAGGATGAGGCTGAGTATTTCCGACAAGC TGTGGGCGAGGAGCCTGATGAGGACATGTTCCCGAAGGCAACCAAGTGGAGGCGGCCCAC TGGGCCCCCAGGCAAGAAGCGGCGGGTAAAGGAACGGAAGCCGGACCGAGGCAGTGACCA GAGGCCTCCCAAGGCTAAGGGCAGACCCCCGGGGACCCAGGCCAAGATGGGACCCAGGGG AGTTGCCAGGGACCGTGGACGAGGCCGATCTTGGCCACCTAAAAGAGTAGCCTGAAGCCA AGCCCGAGTGATAGATGGAATGCCCCAGATTGGGGCCTGAGAGATGCTGCCCTGGGCTCT GCTTGTGGTGGGCCTTCAGGTGCGGTCCTCAGTTTCCTTTCATAAAGGAGAGCTGTTTCC CTAACTACCCCTTTAATAAACCGATTTCTCGTGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCCTCGTGGAGAAGACAGCGACATGGGGCAGTCCGGGCGGTCCCGGCACCAGAAGCG CGCGCGCGCCCAGGCACACCTCCGCAACCTCGAGGCCTATGCCGCGCAGCCACACTCGTT CGTGTTCGCTCGGGGCCGCGCTGGTCGCAGCGTCCGGCAGCTCAGTCTGGACTTGAGACG GGTCATGGAGCCGCTCACCGCCACCCGCCTGCAGATAAGAAAGAAAAATTCTCTGAAAGA TTGCGTGGCAGTGGCCGGGCCCCTTGGGGTCACACACTTCCTGATCTTGAGCAGAACAGA GACCAATATCTACTTTAAGCTGATGCGACTCCCAGGAGGCCCCACCTTAACCTTCAGGAT CAACAAGTACACATTGGTGCGTGATGTAGTCTCCTCGCTACGCCGGCACCGCATGCATGA GCAGCAGTTTGCCCATCCACCTCTCCTGGTGCTCAACAGCTTTGGTCCCCACGGCATGCA CGTGAAGCTCATGGCCACCATGTTCCAGAACCTGTTCCCCTCCATCAATGTGCACAAGGT GAACCTGAACACCATCAAGCGCTGCCTTCTCATCAACTACAACCCCGACTCCCAGGAGCT GGATTTCCGCCATTATAGCATCAAAGTTGTCCCTGTGGGTGCAAGTCGTGGGATGAAGAA GCTTCTCCAAGAGAAGTTCCCCAACATGAGTCGCTTGCAGGACATCAGTGAGCTGCTGGC CACGGGCGCAGGGCTGTCTGAGAGTGAGGCAGAGCCAGATGGCGAGCACAACATCACAGA GCTGCCCCAGGCTGTGGCAGGGCGTGGCAACATGCGGGCACAGCAGAGTGCAGTGAGGCT CACAGAGATCGGGCCTCGGATGACGCTGCAGCTCATCAAGATCCAGGAGGGTGTTGGAGA GGGGAACGTGCTGTTCCACAGTTTCGTGCACAAGACGGAGGAGGAGCTGCAGGCTATCCT GGCAGCCAAGGAGGAGAAGCTGCGGCTCAAGGCCCAGAGGCAGGACCAGCAGGCCCAGAA CATCCAGCGCAAGCGGGAACAGCGAGAGGCCCATAAAAAGAAGAGCCTGGCAGGCATGAA ACGGGCACGGGCAGAGGCCAACGGGGACAGCGATGCCGAGGACCCTGGCGCCCCCCCAGA GGCAGAGGGAGCCAGCCTTCGAGAGGAAGAGGAGGATGAGGCTGAGTATTTCCGACAAGC TGTGGGCGAGGAGCCTGATGAGGACATGTTCCCGAAGGCAACCAAGTGGAGGCGGCCCAC TGGGCCCCCAGGCAAGAAGCGGCGGGTAAAGGAACGGAAGCCGGACCGAGGCAGTGACCA GAGGCCTCCCAAGGCTAAGGGCAGACCCCCGGGGACCCAGGCCAAGATGGGACCCAGGGG AGTTGCCAGGGACCGTGGACGAGGCCGATCTTGGCCACCTAAAAGAGTAGCCTGAAGCCA AGCCCGAGTGATAGATGGAATGCCCCAGATTGGGGCCTGAGAGATGCTGCCCTGGGCTCT GCTTGTGGTGGGCCTTCAGGTGCGGTCCTCAGTTTCCTTTCATAAAGGAGAGCTGTTTCC CTAACTACCCCTTTAATAAACCGATTTCTCGTGAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1121-1221, - strand, RNAz p=0.678361 | |
| 1327-1559, - strand, RNAz p=0.999975 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1121-1221, - strand, RNAz p=0.678361 | |
| 1327-1559, - strand, RNAz p=0.999975 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 34-219, gnl|bosTau2|chr7 (9680419-9680234) | |
| 34-219, gnl|canFam2|chr20 (53955752-53955547) | |
| 34-219, gnl|danRer3|chr14 (51468459-51468653) | |
| 34-219, gnl|dasNov1|scaffold_94496 (3205-2996) | |
| 34-219, gnl|echTel1|scaffold_239601 (3496-3300) | |
| 34-219, gnl|fr1|chrUn (177898974-177899171) | |
| 34-219, gnl|hg17|chr19 (10078158-10078367) | |
| 34-219, gnl|Hg17|chr19 (10078167-10078352) | |
| 34-219, gnl|loxAfr1|scaffold_117209 (743-538) | |
| 34-219, gnl|mm7|chr9 (20764944-20765149) | |
| 34-219, gnl|Mm7|chr9 (20764953-20765138) | |
| 34-219, gnl|monDom2|scaffold_106 (1681890-1682108) | |
| 34-219, gnl|panTro1|chr20 (10446208-10446417) | |
| 34-219, gnl|rheMac2|chr19 (9908349-9908558) | |
| 34-219, gnl|rn3|chr8 (19909919-19910124) | |
| 34-219, gnl|tetNig1|chr3 (11545579-11545761) | |
| 34-219, gnl|xenTro1|scaffold_56 (2512187-2512380) | |
| 366-552, gnl|bosTau2|chr7 (9679066-9678880) | |
| 366-552, gnl|Hg17|chr19 (10079638-10079824) | |
| 366-552, gnl|Mm7|chr9 (20766325-20766509) | |
| 721-855, gnl|bosTau2|chr7 (9677795-9677661) | |
| 721-855, gnl|canFam2|chr20 (53953306-53953174) | |
| 721-855, gnl|danRer3|chr14 (51475511-51475643) | |
| 721-855, gnl|dasNov1|scaffold_94496 (292-160) | |
| 721-855, gnl|echTel1|scaffold_239601 (1409-1277) | |
| 721-855, gnl|fr1|chrUn (177900908-177901040) | |
| 721-855, gnl|galGal2|chrUn (57388641-57388525) | |
| 721-855, gnl|hg17|chr19 (10081797-10081929) | |
| 721-855, gnl|Hg17|chr19 (10081796-10081930) | |
| 721-855, gnl|loxAfr1|scaffold_2593 (41738-41637) | |
| 721-855, gnl|mm7|chr9 (20767637-20767768) | |
| 721-855, gnl|Mm7|chr9 (20767636-20767766) | |
| 721-855, gnl|monDom2|scaffold_106 (1685363-1685495) | |
| 721-855, gnl|oryCun1|scaffold_146945 (727-595) | |
| 721-855, gnl|panTro1|chr20 (10449922-10450054) | |
| 721-855, gnl|rheMac2|chr19 (9911978-9912110) | |
| 721-855, gnl|rn3|chr8 (19912537-19912656) | |
| 721-855, gnl|tetNig1|chr3 (11547269-11547401) | |
| 721-855, gnl|xenTro1|scaffold_56 (2516324-2516456) | |
| 926-1056, gnl|bosTau2|chr7 (9677398-9677268) | |
| 926-1056, gnl|Hg17|chr19 (10082160-10082290) | |
| 926-1056, gnl|Mm7|chr9 (20768006-20768136) | |
| 1058-1221, gnl|bosTau2|chr7 (9677193-9677030) | |
| 1058-1221, gnl|canFam2|chr20 (53952701-53952573) | |
| 1058-1221, gnl|danRer3|chr14 (51482339-51482467) | |
| 1058-1221, gnl|echTel1|scaffold_239601 (811-678) | |
| 1058-1221, gnl|fr1|chrUn (177901582-177901699) | |
| 1058-1221, gnl|hg17|chr19 (10082366-10082499) | |
| 1058-1221, gnl|Hg17|chr19 (10082374-10082540) | |
| 1058-1221, gnl|loxAfr1|scaffold_2593 (41438-41318) | |
| 1058-1221, gnl|mm7|chr9 (20768138-20768260) | |
| 1058-1221, gnl|Mm7|chr9 (20768138-20768301) | |
| 1058-1221, gnl|monDom2|scaffold_106 (1686071-1686208) | |
| 1058-1221, gnl|oryCun1|scaffold_146945 (139-7) | |
| 1058-1221, gnl|panTro1|chr20 (10450491-10450624) | |
| 1058-1221, gnl|rheMac2|chr19 (9912546-9912679) | |
| 1058-1221, gnl|rn3|chr8 (19913242-19913372) | |
| 1058-1221, gnl|tetNig1|chr3 (11547932-11548054) | |
| 1058-1221, gnl|xenTro1|scaffold_56 (2517390-2517517) | |
| 1223-1595, gnl|bosTau2|chr7 (9676938-9676569) | |
| 1223-1595, gnl|Hg17|chr19 (10082620-10082976) | |
| 1223-1595, gnl|Mm7|chr9 (20768387-20768721) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-219, gnl|bosTau2|chr7 (9680419-9680234) | |
| 34-219, gnl|canFam2|chr20 (53955752-53955547) | |
| 34-219, gnl|danRer3|chr14 (51468459-51468653) | |
| 34-219, gnl|dasNov1|scaffold_94496 (3205-2996) | |
| 34-219, gnl|echTel1|scaffold_239601 (3496-3300) | |
| 34-219, gnl|fr1|chrUn (177898974-177899171) | |
| 34-219, gnl|hg17|chr19 (10078158-10078367) | |
| 34-219, gnl|Hg17|chr19 (10078167-10078352) | |
| 34-219, gnl|loxAfr1|scaffold_117209 (743-538) | |
| 34-219, gnl|mm7|chr9 (20764944-20765149) | |
| 34-219, gnl|Mm7|chr9 (20764953-20765138) | |
| 34-219, gnl|monDom2|scaffold_106 (1681890-1682108) | |
| 34-219, gnl|panTro1|chr20 (10446208-10446417) | |
| 34-219, gnl|rheMac2|chr19 (9908349-9908558) | |
| 34-219, gnl|rn3|chr8 (19909919-19910124) | |
| 34-219, gnl|tetNig1|chr3 (11545579-11545761) | |
| 34-219, gnl|xenTro1|scaffold_56 (2512187-2512380) | |
| 366-552, gnl|bosTau2|chr7 (9679066-9678880) | |
| 366-552, gnl|Hg17|chr19 (10079638-10079824) | |
| 366-552, gnl|Mm7|chr9 (20766325-20766509) | |
| 721-855, gnl|bosTau2|chr7 (9677795-9677661) | |
| 721-855, gnl|canFam2|chr20 (53953306-53953174) | |
| 721-855, gnl|danRer3|chr14 (51475511-51475643) | |
| 721-855, gnl|dasNov1|scaffold_94496 (292-160) | |
| 721-855, gnl|echTel1|scaffold_239601 (1409-1277) | |
| 721-855, gnl|fr1|chrUn (177900908-177901040) | |
| 721-855, gnl|galGal2|chrUn (57388641-57388525) | |
| 721-855, gnl|hg17|chr19 (10081797-10081929) | |
| 721-855, gnl|Hg17|chr19 (10081796-10081930) | |
| 721-855, gnl|loxAfr1|scaffold_2593 (41738-41637) | |
| 721-855, gnl|mm7|chr9 (20767637-20767768) | |
| 721-855, gnl|Mm7|chr9 (20767636-20767766) | |
| 721-855, gnl|monDom2|scaffold_106 (1685363-1685495) | |
| 721-855, gnl|oryCun1|scaffold_146945 (727-595) | |
| 721-855, gnl|panTro1|chr20 (10449922-10450054) | |
| 721-855, gnl|rheMac2|chr19 (9911978-9912110) | |
| 721-855, gnl|rn3|chr8 (19912537-19912656) | |
| 721-855, gnl|tetNig1|chr3 (11547269-11547401) | |
| 721-855, gnl|xenTro1|scaffold_56 (2516324-2516456) | |
| 926-1056, gnl|bosTau2|chr7 (9677398-9677268) | |
| 926-1056, gnl|Hg17|chr19 (10082160-10082290) | |
| 926-1056, gnl|Mm7|chr9 (20768006-20768136) | |
| 1058-1221, gnl|bosTau2|chr7 (9677193-9677030) | |
| 1058-1221, gnl|canFam2|chr20 (53952701-53952573) | |
| 1058-1221, gnl|danRer3|chr14 (51482339-51482467) | |
| 1058-1221, gnl|echTel1|scaffold_239601 (811-678) | |
| 1058-1221, gnl|fr1|chrUn (177901582-177901699) | |
| 1058-1221, gnl|hg17|chr19 (10082366-10082499) | |
| 1058-1221, gnl|Hg17|chr19 (10082374-10082540) | |
| 1058-1221, gnl|loxAfr1|scaffold_2593 (41438-41318) | |
| 1058-1221, gnl|mm7|chr9 (20768138-20768260) | |
| 1058-1221, gnl|Mm7|chr9 (20768138-20768301) | |
| 1058-1221, gnl|monDom2|scaffold_106 (1686071-1686208) | |
| 1058-1221, gnl|oryCun1|scaffold_146945 (139-7) | |
| 1058-1221, gnl|panTro1|chr20 (10450491-10450624) | |
| 1058-1221, gnl|rheMac2|chr19 (9912546-9912679) | |
| 1058-1221, gnl|rn3|chr8 (19913242-19913372) | |
| 1058-1221, gnl|tetNig1|chr3 (11547932-11548054) | |
| 1058-1221, gnl|xenTro1|scaffold_56 (2517390-2517517) | |
| 1223-1595, gnl|bosTau2|chr7 (9676938-9676569) | |
| 1223-1595, gnl|Hg17|chr19 (10082620-10082976) | |
| 1223-1595, gnl|Mm7|chr9 (20768387-20768721) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nmm (0.265604) | |
| eru (0.240096) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cov (0.132153) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) | |
| eru (0.240096) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cov (0.132153) | |
| clu (0.119646) | |
| jca (0.11396) |