Non-Coding RNA Search

Ss1.1-Mixn-0003c03.5

Sequence:


               
               GAGGGAGCGCACGGCGGGGCGCGGCCAACGCTGGGACTCCGCGCATCGCTGGACGCGGCC
GGGCGCCCATGGCGTTCGCGCTACTGCGCCCCGTCGGTGCGCACGTGTTGTACCCGGACG
TGAGGCTGCTGAGCGAGGACGAGGAGAACCGCAGCGAGAGCGACGCCTCCGACCAGTCGT
TCGGCTGCTGCGAGGGCCTGGAGGCGGCGCGCCGCGGCCCGGGCCCCGGGGGCGGGCGGC
GGGCGAGCGGCGGCGCGGGCCCGGTGGTGGTGGTGCGACAGCGGCAGGCGGCCAACGCGC
GGGAGCGGGACCGCACGCAGAGTGTGAACACGGCCTTCACGGCGCTGCGCACGCTCATCC
CCACCGAGCCGGTGGACCGCAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCGTCCAGCT
ACATCGCGCATCTGGCCAACGTGCTGCTGCTGGGCGACGCGGCCGACGACGGGCAGCCGT
GCTTCCGTGCGGCTGGCAGTGCCAAGAGCGCGGTCCCCGCCGCCCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGAGCGCACGGCGGGGCGCGGCCAACGCTGGGACTCCGCGCATCGCTGGACGCGGCC
GGGCGCCCATGGCGTTCGCGCTACTGCGCCCCGTCGGTGCGCACGTGTTGTACCCGGACG
TGAGGCTGCTGAGCGAGGACGAGGAGAACCGCAGCGAGAGCGACGCCTCCGACCAGTCGT
TCGGCTGCTGCGAGGGCCTGGAGGCGGCGCGCCGCGGCCCGGGCCCCGGGGGCGGGCGGC
GGGCGAGCGGCGGCGCGGGCCCGGTGGTGGTGGTGCGACAGCGGCAGGCGGCCAACGCGC
GGGAGCGGGACCGCACGCAGAGTGTGAACACGGCCTTCACGGCGCTGCGCACGCTCATCC
CCACCGAGCCGGTGGACCGCAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCGTCCAGCT
ACATCGCGCATCTGGCCAACGTGCTGCTGCTGGGCGACGCGGCCGACGACGGGCAGCCGT
GCTTCCGTGCGGCTGGCAGTGCCAAGAGCGCGGTCCCCGCCGCCCCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|664825|gb|AAB48215.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|664825|gb|AAB48215.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               48-527, gnl|bosTau2|chr14 (50973-50471)
               

               
               48-527, gnl|Hg17|chr8 (145461385-145461885)
               

               
               48-527, gnl|Mm7|chr15 (76540128-76540644)
               


               
               183-496, gnl|bosTau2|chr13 (18231629-18231317)
               

               
               183-496, gnl|Hg17|chr10 (23521849-23522167)
               

               
               183-496, gnl|Mm7|chr2 (19511397-19511712)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-527, gnl|bosTau2|chr14 (50973-50471)
               

               
               48-527, gnl|Hg17|chr8 (145461385-145461885)
               

               
               48-527, gnl|Mm7|chr15 (76540128-76540644)
               


               
               183-496, gnl|bosTau2|chr13 (18231629-18231317)
               

               
               183-496, gnl|Hg17|chr10 (23521849-23522167)
               

               
               183-496, gnl|Mm7|chr2 (19511397-19511712)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	48-527, gnl\|bosTau2\|chr14 (50973-50471)
	48-527, gnl\|Hg17\|chr8 (145461385-145461885)
	48-527, gnl\|Mm7\|chr15 (76540128-76540644)

	183-496, gnl\|bosTau2\|chr13 (18231629-18231317)
	183-496, gnl\|Hg17\|chr10 (23521849-23522167)
	183-496, gnl\|Mm7\|chr2 (19511397-19511712)