Non-Coding RNA Search

Ss1.1-Mixn-0003f06.5

Sequence:


               
               CAGCGCGGGAGGATTCGGGTTTGGAAGCGGCGGCAACACCACGTCCTTCGGCACCCTGGC
GAGTCAGAACGCTCCAACTTTTGGCTCCCTGTCCCAACAGTCTTCTGGGTTTGGGACCCA
GAGCGGGGGGTTCTCCGGCTTTGGATCAGGCGGAGGAGGTTTCAGCTTTGGATCGTCTAG
CTCGTCCGTCCAGGGCTTCGGTGGCTGGAGGAGCTGAGCGCCTGTCGGTGCTCCCTTCCT
TCTGTTCCCGCGACCAGCCAGCTGCGTCTCAGCGCCTCATCGCTGAGAAGCCCCGGAGCA
GTCCTTTGAAGTGGGCATCCTCGCTGAAATACACAGCCAGAAAGAAGCAGCAGACACCGA
ACTCCGGAGCTGCTGGCCTGCTCGTTTGGTTCTGTGTTTGTGTTGGTTATGCGCTGCCCC
GCCCCCGCTATTAAACCGTTTCGTCTGTTTCTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCGGGAGGATTCGGGTTTGGAAGCGGCGGCAACACCACGTCCTTCGGCACCCTGGC
GAGTCAGAACGCTCCAACTTTTGGCTCCCTGTCCCAACAGTCTTCTGGGTTTGGGACCCA
GAGCGGGGGGTTCTCCGGCTTTGGATCAGGCGGAGGAGGTTTCAGCTTTGGATCGTCTAG
CTCGTCCGTCCAGGGCTTCGGTGGCTGGAGGAGCTGAGCGCCTGTCGGTGCTCCCTTCCT
TCTGTTCCCGCGACCAGCCAGCTGCGTCTCAGCGCCTCATCGCTGAGAAGCCCCGGAGCA
GTCCTTTGAAGTGGGCATCCTCGCTGAAATACACAGCCAGAAAGAAGCAGCAGACACCGA
ACTCCGGAGCTGCTGGCCTGCTCGTTTGGTTCTGTGTTTGTGTTGGTTATGCGCTGCCCC
GCCCCCGCTATTAAACCGTTTCGTCTGTTTCTGCAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-160, gnl|bosTau2|chr11 (81822800-81822949)
               

               
               11-160, gnl|Hg17|chr9 (131135563-131135712)
               

               
               11-160, gnl|Mm7|chr2 (32058324-32058461)
               


               
               177-451, gnl|bosTau2|chr11 (81824321-81824581)
               

               
               177-451, gnl|Hg17|chr9 (131138388-131138639)
               

               
               177-451, gnl|Mm7|chr2 (32059423-32059673)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-160, gnl|bosTau2|chr11 (81822800-81822949)
               

               
               11-160, gnl|Hg17|chr9 (131135563-131135712)
               

               
               11-160, gnl|Mm7|chr2 (32058324-32058461)
               


               
               177-451, gnl|bosTau2|chr11 (81824321-81824581)
               

               
               177-451, gnl|Hg17|chr9 (131138388-131138639)
               

               
               177-451, gnl|Mm7|chr2 (32059423-32059673)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.351679)
               

               
               nep (0.183925)
               

               
               duo (0.172801)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               nep (0.183925)
               

               
               duo (0.172801)

	11-160, gnl\|bosTau2\|chr11 (81822800-81822949)
	11-160, gnl\|Hg17\|chr9 (131135563-131135712)
	11-160, gnl\|Mm7\|chr2 (32058324-32058461)

	177-451, gnl\|bosTau2\|chr11 (81824321-81824581)
	177-451, gnl\|Hg17\|chr9 (131138388-131138639)
	177-451, gnl\|Mm7\|chr2 (32059423-32059673)