Non-Coding RNA Search

Ss1.1-Mixn-0003f09.5

Sequence:


               
               TCCCCGTGTCTCCCAGCTGCCCACACTGCCCCCACCCATGCCCTGGAACCTGCCCGCTGG
TGTGGACTGCACTACCAGTGGCGTCCTGGCCTTGACTGCACTTCTCTTCAAGATGGAAGA
AGCCAACCTGGCAAGCCGAGCAAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGATCCT
CAGCCACAGGAAGCCGCCCTCAAGTCTGGGGGTGACTCCGGCTCCTGTGCCCACGTCTCT
GGGTCTGCCCCCTGGCCCCTCCAGCTACCTGCTCCCCGGCAGCCTCCCCCTGGGGGGCTG
TGGCTCTACCCCTCCCACCCCCACCGGCCTGGCTGCAGCGGCTGACAAGAGAGAGGGCAG
CAGCAGCTCCGAGGGACGTGGGGACACAGACAAGTACCTGAAGAAGCTGCACACGCAGGA
GCGGGCGGTGGAGGAGGTGAAGCTGGCCATCAAGCCGTATTACCAGAAGAAGGATATCAC
CAAGGACGAGTACAAGGACATCCTGAGGAAGGCCGTCCACAAGATCTGCCACAGCAAAAG
TGGGGAGATCAACCCGGTGAAGGTGAGCAACCTGGTGCGCGCCTACGTCCAACGCTACCG
CTACTTCCGCAAGCACGGCCGCAAGCCGGGGGACCCCCCGGGACCCCCACGGCCGCCCAA
GGAGCCAGGACCGCCTGACAAGGGTGGCCCGGGCCTGCCCCTGCCCCCTCTCTGAGACCC
CAACCGCCCCTTTCCGCCTTCCCCTCTTTGGAATTCTGGACGTATTTATGGCCCCGCCTC
CCCACTTCCCTCCCCCATCAGTGGGATGATTGGGGGGGGTCGCTGTGGGAAAGAGGAGAG
CCCCCTGCCCAGCCCCTTGCGTCTCCTGCAGCCCGGCTGTCCCCATCGCCCTGCCCTTCT
GTTCGTGCCCCTCCCCCAATTTCATTAAAATTTCATGAAATGTTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCGTGTCTCCCAGCTGCCCACACTGCCCCCACCCATGCCCTGGAACCTGCCCGCTGG
TGTGGACTGCACTACCAGTGGCGTCCTGGCCTTGACTGCACTTCTCTTCAAGATGGAAGA
AGCCAACCTGGCAAGCCGAGCAAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGATCCT
CAGCCACAGGAAGCCGCCCTCAAGTCTGGGGGTGACTCCGGCTCCTGTGCCCACGTCTCT
GGGTCTGCCCCCTGGCCCCTCCAGCTACCTGCTCCCCGGCAGCCTCCCCCTGGGGGGCTG
TGGCTCTACCCCTCCCACCCCCACCGGCCTGGCTGCAGCGGCTGACAAGAGAGAGGGCAG
CAGCAGCTCCGAGGGACGTGGGGACACAGACAAGTACCTGAAGAAGCTGCACACGCAGGA
GCGGGCGGTGGAGGAGGTGAAGCTGGCCATCAAGCCGTATTACCAGAAGAAGGATATCAC
CAAGGACGAGTACAAGGACATCCTGAGGAAGGCCGTCCACAAGATCTGCCACAGCAAAAG
TGGGGAGATCAACCCGGTGAAGGTGAGCAACCTGGTGCGCGCCTACGTCCAACGCTACCG
CTACTTCCGCAAGCACGGCCGCAAGCCGGGGGACCCCCCGGGACCCCCACGGCCGCCCAA
GGAGCCAGGACCGCCTGACAAGGGTGGCCCGGGCCTGCCCCTGCCCCCTCTCTGAGACCC
CAACCGCCCCTTTCCGCCTTCCCCTCTTTGGAATTCTGGACGTATTTATGGCCCCGCCTC
CCCACTTCCCTCCCCCATCAGTGGGATGATTGGGGGGGGTCGCTGTGGGAAAGAGGAGAG
CCCCCTGCCCAGCCCCTTGCGTCTCCTGCAGCCCGGCTGTCCCCATCGCCCTGCCCTTCT
GTTCGTGCCCCTCCCCCAATTTCATTAAAATTTCATGAAATGTTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               173-394, - strand, RNAz p=0.970216

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-394, - strand, RNAz p=0.970216

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               173-394, gnl|bosTau2|chr18 (48743677-48743898)
               

               
               173-394, gnl|Hg17|chr19 (54849718-54849939)
               

               
               173-394, gnl|Mm7|chr7 (41181354-41181133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-394, gnl|bosTau2|chr18 (48743677-48743898)
               

               
               173-394, gnl|Hg17|chr19 (54849718-54849939)
               

               
               173-394, gnl|Mm7|chr7 (41181354-41181133)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sme (0.305437)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	173-394, gnl\|bosTau2\|chr18 (48743677-48743898)
	173-394, gnl\|Hg17\|chr19 (54849718-54849939)
	173-394, gnl\|Mm7\|chr7 (41181354-41181133)

	sme (0.305437)
	ebs (0.236602)
	fli (0.202881)
	ill (0.175593)
	hlv (0.139256)
	cov (0.132153)
	eep (0.122564)
	ecc (0.115035)
	eje (0.0988338)