Ss1.1-Mixn-0003f12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCACTGCGTCTTCAATGATACCCGGCTGGACACGGTGCTGAGGGAGTTAAGAAGGGA AAATCTCACCTGGCCATTGTGCAGCGGGTGAATAATGAGGGAGAAGGGGACCCCTTCTAC GAGGTGATGGGCATTGTCACACTGGAGGATATCATAGAGGAGATCATCAAGTCGGAGATC CTGGATGAAACGGACCTCTACAATGACAATCGGAAAAAGCAGAGGGTCCCGCACCGGGAT AGGAAGCGACACGACTTCTCCTTGTTTAAGCTTTCCGACTCGGAGATGAGGGTGAAGATC TCTCCGCAGCTTCTGCTGGCCACGCACCGCTTCATGGCCACAGAAGTGGAGCCCTTTAAG TCTCTGTACCTCTCGGAGAAGATCCTGCTCAGGCTCCTAAAACATCCTAATGTGATCCAG GAGCTGAAGTTTGATGAGAAGAACAAGAAGGCCCCAGAACACTACCTCTACCAGCGCAAC CGCCCCGTGGACTACTTTGTGCTGCTTCTGCAGGGTAAAGTGGAGGTGGAGGTTGGTAAG GAAGGCCTTCGCTTCGAGAACGGAGCCTTCACCTACTATGGTGTCCCAGCCATGATGACC ACTGCCTGCTCAGATAACGATGTGCGGAAGGTCGGAAGTCTGGCTGGATCCTCTGCCTTT CTCAACCGATCCCCTTCGCGCTGCAGTGGGTTGAACCGCTCTGAGTCTCCCAACCGCGAG CGCAGTGACTTTGGGGGGAGCAACACCCAGCTGTGCAGCAGCAGCAACAACCTCTACACG CCTGACTACTCCGTCCACATCCTCAGCGATGTGCAGTTCGTGAAGGTCACACGGCAGCAG TATCAGAACGCACTCACCGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGACATGGAA GCCTTCACTGACGGAGACTCCACCAAGGCCCCCACGACCCGGGGCACACCCCAGACTCCC AAGGAAGACCCTGCCGCCACCCTCCTGAGCAACAGGAACATCCTGCCGTGCAGCCGCTCC GATGGGCTGAGAAGCCCCGGTGAGGTCGTGTACCTGAGGATGGAGGAGACGGCCTTCGCC CAGGAGGAGATGACGGACTTGGAGGAGCCGAGCACACAGCAGCTCTCACTGTCTCCTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCACTGCGTCTTCAATGATACCCGGCTGGACACGGTGCTGAGGGAGTTAAGAAGGGA AAATCTCACCTGGCCATTGTGCAGCGGGTGAATAATGAGGGAGAAGGGGACCCCTTCTAC GAGGTGATGGGCATTGTCACACTGGAGGATATCATAGAGGAGATCATCAAGTCGGAGATC CTGGATGAAACGGACCTCTACAATGACAATCGGAAAAAGCAGAGGGTCCCGCACCGGGAT AGGAAGCGACACGACTTCTCCTTGTTTAAGCTTTCCGACTCGGAGATGAGGGTGAAGATC TCTCCGCAGCTTCTGCTGGCCACGCACCGCTTCATGGCCACAGAAGTGGAGCCCTTTAAG TCTCTGTACCTCTCGGAGAAGATCCTGCTCAGGCTCCTAAAACATCCTAATGTGATCCAG GAGCTGAAGTTTGATGAGAAGAACAAGAAGGCCCCAGAACACTACCTCTACCAGCGCAAC CGCCCCGTGGACTACTTTGTGCTGCTTCTGCAGGGTAAAGTGGAGGTGGAGGTTGGTAAG GAAGGCCTTCGCTTCGAGAACGGAGCCTTCACCTACTATGGTGTCCCAGCCATGATGACC ACTGCCTGCTCAGATAACGATGTGCGGAAGGTCGGAAGTCTGGCTGGATCCTCTGCCTTT CTCAACCGATCCCCTTCGCGCTGCAGTGGGTTGAACCGCTCTGAGTCTCCCAACCGCGAG CGCAGTGACTTTGGGGGGAGCAACACCCAGCTGTGCAGCAGCAGCAACAACCTCTACACG CCTGACTACTCCGTCCACATCCTCAGCGATGTGCAGTTCGTGAAGGTCACACGGCAGCAG TATCAGAACGCACTCACCGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGACATGGAA GCCTTCACTGACGGAGACTCCACCAAGGCCCCCACGACCCGGGGCACACCCCAGACTCCC AAGGAAGACCCTGCCGCCACCCTCCTGAGCAACAGGAACATCCTGCCGTGCAGCCGCTCC GATGGGCTGAGAAGCCCCGGTGAGGTCGTGTACCTGAGGATGGAGGAGACGGCCTTCGCC CAGGAGGAGATGACGGACTTGGAGGAGCCGAGCACACAGCAGCTCTCACTGTCTCCTGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 342-460, - strand, RNAz p=0.964118 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 342-460, - strand, RNAz p=0.964118 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 58-206, gnl|bosTau2|chr11 (3515382-3515234) | |
| 58-206, gnl|canFam2|chr10 (48295946-48295785) | |
| 58-206, gnl|danRer3|chrNA (199275773-199275925) | |
| 58-206, gnl|dasNov1|scaffold_1510 (6522-6682) | |
| 58-206, gnl|echTel1|scaffold_62570 (650-489) | |
| 58-206, gnl|fr1|chrUn (28618467-28618315) | |
| 58-206, gnl|galGal2|chr6 (21315405-21315245) | |
| 58-206, gnl|hg17|chr2 (96884613-96884773) | |
| 58-206, gnl|Hg17|chr2 (96884622-96884770) | |
| 58-206, gnl|loxAfr1|scaffold_31947 (5916-5757) | |
| 58-206, gnl|Mm7|chr1 (36739370-36739518) | |
| 58-206, gnl|monDom2|scaffold_1 (154417211-154417371) | |
| 58-206, gnl|oryCun1|scaffold_6896 (4706-4866) | |
| 58-206, gnl|panTro1|chr12 (99906050-99906210) | |
| 58-206, gnl|rheMac2|chr13 (97219269-97219429) | |
| 58-206, gnl|tetNig1|chrUn_random (864386-864234) | |
| 58-206, gnl|xenTro1|scaffold_217 (163061-163221) | |
| 342-514, gnl|bosTau2|chr26 (12489685-12489513) | |
| 342-514, gnl|Hg17|chr10 (101111972-101112144) | |
| 342-514, gnl|Mm7|chr19 (43363480-43363652) | |
| 824-934, gnl|bosTau2|chr26 (11711007-11711117) | |
| 824-934, gnl|Hg17|chr10 (101137565-101137702) | |
| 824-934, gnl|Mm7|chr19 (43385292-43385429) | |
| 1010-1139, gnl|bosTau2|chr26 (11711307-11711436) | |
| 1010-1139, gnl|canFam2|chr28 (15340239-15340339) | |
| 1010-1139, gnl|danRer3|chr13 (41049773-41049696) | |
| 1010-1139, gnl|dasNov1|scaffold_69516 (8616-8516) | |
| 1010-1139, gnl|fr1|chrUn (156931408-156931508) | |
| 1010-1139, gnl|galGal2|chr6 (21312308-21312211) | |
| 1010-1139, gnl|hg17|chr10 (101137878-101137978) | |
| 1010-1139, gnl|Hg17|chr10 (101137899-101138028) | |
| 1010-1139, gnl|loxAfr1|scaffold_2071 (58506-58406) | |
| 1010-1139, gnl|mm7|chr19 (43385616-43385716) | |
| 1010-1139, gnl|Mm7|chr19 (43385637-43385766) | |
| 1010-1139, gnl|monDom2|scaffold_14 (22870743-22870647) | |
| 1010-1139, gnl|oryCun1|scaffold_214183 (154265-154170) | |
| 1010-1139, gnl|panTro1|chr8 (102882995-102883095) | |
| 1010-1139, gnl|rheMac2|chr9 (98999811-98999911) | |
| 1010-1139, gnl|rn3|chr1 (247469735-247469635) | |
| 1010-1139, gnl|tetNig1|chr17 (5188899-5189006) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-206, gnl|bosTau2|chr11 (3515382-3515234) | |
| 58-206, gnl|canFam2|chr10 (48295946-48295785) | |
| 58-206, gnl|danRer3|chrNA (199275773-199275925) | |
| 58-206, gnl|dasNov1|scaffold_1510 (6522-6682) | |
| 58-206, gnl|echTel1|scaffold_62570 (650-489) | |
| 58-206, gnl|fr1|chrUn (28618467-28618315) | |
| 58-206, gnl|galGal2|chr6 (21315405-21315245) | |
| 58-206, gnl|hg17|chr2 (96884613-96884773) | |
| 58-206, gnl|Hg17|chr2 (96884622-96884770) | |
| 58-206, gnl|loxAfr1|scaffold_31947 (5916-5757) | |
| 58-206, gnl|Mm7|chr1 (36739370-36739518) | |
| 58-206, gnl|monDom2|scaffold_1 (154417211-154417371) | |
| 58-206, gnl|oryCun1|scaffold_6896 (4706-4866) | |
| 58-206, gnl|panTro1|chr12 (99906050-99906210) | |
| 58-206, gnl|rheMac2|chr13 (97219269-97219429) | |
| 58-206, gnl|tetNig1|chrUn_random (864386-864234) | |
| 58-206, gnl|xenTro1|scaffold_217 (163061-163221) | |
| 342-514, gnl|bosTau2|chr26 (12489685-12489513) | |
| 342-514, gnl|Hg17|chr10 (101111972-101112144) | |
| 342-514, gnl|Mm7|chr19 (43363480-43363652) | |
| 824-934, gnl|bosTau2|chr26 (11711007-11711117) | |
| 824-934, gnl|Hg17|chr10 (101137565-101137702) | |
| 824-934, gnl|Mm7|chr19 (43385292-43385429) | |
| 1010-1139, gnl|bosTau2|chr26 (11711307-11711436) | |
| 1010-1139, gnl|canFam2|chr28 (15340239-15340339) | |
| 1010-1139, gnl|danRer3|chr13 (41049773-41049696) | |
| 1010-1139, gnl|dasNov1|scaffold_69516 (8616-8516) | |
| 1010-1139, gnl|fr1|chrUn (156931408-156931508) | |
| 1010-1139, gnl|galGal2|chr6 (21312308-21312211) | |
| 1010-1139, gnl|hg17|chr10 (101137878-101137978) | |
| 1010-1139, gnl|Hg17|chr10 (101137899-101138028) | |
| 1010-1139, gnl|loxAfr1|scaffold_2071 (58506-58406) | |
| 1010-1139, gnl|mm7|chr19 (43385616-43385716) | |
| 1010-1139, gnl|Mm7|chr19 (43385637-43385766) | |
| 1010-1139, gnl|monDom2|scaffold_14 (22870743-22870647) | |
| 1010-1139, gnl|oryCun1|scaffold_214183 (154265-154170) | |
| 1010-1139, gnl|panTro1|chr8 (102882995-102883095) | |
| 1010-1139, gnl|rheMac2|chr9 (98999811-98999911) | |
| 1010-1139, gnl|rn3|chr1 (247469735-247469635) | |
| 1010-1139, gnl|tetNig1|chr17 (5188899-5189006) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |