Non-Coding RNA Search

Ss1.1-Mixn-0003h01.5

Sequence:


               
               GCAATTGGCAAGATGGCAAGAGTCTTCTCTGTTCTCAGGGAGGAGAGTGAAAGTGTGCTG
ACACTCAAGGGCCTGACTCCCACAGGGATGTTGCCTAGTGGAGTGTTGGCTGGAGGACGG
CAGACCCTGCAAAGTGGTAATGATGTTATGCAACTTGCTGTGCCTCAGATGGACTGGGGC
ACACCTCACTCTTTTGCTAACAATACACATAATGCATGCAGGGAATTCTTTCTGCTTTTT
AGTTCTTGTCTCAGCAGCTGACATAGGCAGAACACTATATGATAGGTAGTGTCTGATTAA
TAACCTGATTGGGGGCAGAAAATTGATAGAATGAGTATTCTTTTCAATTGAAAGTAATGG
TTAGTCTCTCCGCTTTTCATGAAATGATATGGGAGTAACTCATATCATAATGTCTGAAAT
ATTTATTTATTCATTTATCTAATGCACCCTTTTCTTTTTAAAGCCTCAGTTTCATAATGT
GAATCAAGGATATCCATATTATTTAAATGGAAATGTAATTCCAAGTTTCTTATTTTTTTA
TCTTTTTACTTTATGTAATTGTATTAGACTATGCATATATTTTCAGTTATTAATTTTAGA
ATTAACAATCTGCTTGGGCCCCAGAACATTACTTATGCACTTCACTTGCCAAAATATTTG
TGCAAGGTTTTGTATCCTGGTAATTGATGCCAAAGTTTGTTTTCTGTGGTGTTTGTCAAA
TGTTCTATGTATAATTGACTGTCTGTAACATGCTGTTTCCTTCCTCTGCAGATGTAGCTG
CTTTCCTAAATCTGTCTGTCTTTCTTTAGGTTAGCTGTATGTCTGTAAAAGTATGTTAAA
TTAAATTACTCTATCAGACACTTGTCTGTCTTTTGATGTAGAAGCAACTTTGTAGCACCT
TGTTTTGAGGTATGCTGCATTTGTTGCTGTATTTTGTGCATTCTAAACATGAATGTAACA
TTAGATATTAAGTCATTGTTATAAGGGGTTGAACTTAAATCTTGTAAGTCAAAATTGAAA
GGGTGTTATTAAGTGTGCCTTTATTTTGCATGAAAATAAAAAGAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATTGGCAAGATGGCAAGAGTCTTCTCTGTTCTCAGGGAGGAGAGTGAAAGTGTGCTG
ACACTCAAGGGCCTGACTCCCACAGGGATGTTGCCTAGTGGAGTGTTGGCTGGAGGACGG
CAGACCCTGCAAAGTGGTAATGATGTTATGCAACTTGCTGTGCCTCAGATGGACTGGGGC
ACACCTCACTCTTTTGCTAACAATACACATAATGCATGCAGGGAATTCTTTCTGCTTTTT
AGTTCTTGTCTCAGCAGCTGACATAGGCAGAACACTATATGATAGGTAGTGTCTGATTAA
TAACCTGATTGGGGGCAGAAAATTGATAGAATGAGTATTCTTTTCAATTGAAAGTAATGG
TTAGTCTCTCCGCTTTTCATGAAATGATATGGGAGTAACTCATATCATAATGTCTGAAAT
ATTTATTTATTCATTTATCTAATGCACCCTTTTCTTTTTAAAGCCTCAGTTTCATAATGT
GAATCAAGGATATCCATATTATTTAAATGGAAATGTAATTCCAAGTTTCTTATTTTTTTA
TCTTTTTACTTTATGTAATTGTATTAGACTATGCATATATTTTCAGTTATTAATTTTAGA
ATTAACAATCTGCTTGGGCCCCAGAACATTACTTATGCACTTCACTTGCCAAAATATTTG
TGCAAGGTTTTGTATCCTGGTAATTGATGCCAAAGTTTGTTTTCTGTGGTGTTTGTCAAA
TGTTCTATGTATAATTGACTGTCTGTAACATGCTGTTTCCTTCCTCTGCAGATGTAGCTG
CTTTCCTAAATCTGTCTGTCTTTCTTTAGGTTAGCTGTATGTCTGTAAAAGTATGTTAAA
TTAAATTACTCTATCAGACACTTGTCTGTCTTTTGATGTAGAAGCAACTTTGTAGCACCT
TGTTTTGAGGTATGCTGCATTTGTTGCTGTATTTTGTGCATTCTAAACATGAATGTAACA
TTAGATATTAAGTCATTGTTATAAGGGGTTGAACTTAAATCTTGTAAGTCAAAATTGAAA
GGGTGTTATTAAGTGTGCCTTTATTTTGCATGAAAATAAAAAGAATTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               26-265, - strand, RNAz p=0.977531
               

               
               306-424, - strand, RNAz p=0.519518
               

               
               720-999, + strand, RNAz p=0.993598

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-265, - strand, RNAz p=0.977531
               

               
               306-424, - strand, RNAz p=0.519518
               

               
               720-999, + strand, RNAz p=0.993598

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               720-999, DB339833 TESTI4 Homo sapiens cDNA clone TESTI4009017 3', mRNA 
(dbj|DB339833.1|), blast E-value=0, identity=95.71% 
               

               
               720-999, CH3#009_E07T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU747122.1|), blast E-value=0, identity=97.86% 
               

               
               720-999, ig27e09.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK824517.1|), 
blast E-value=0, identity=95.71% 
               

               
               720-999, CT020007A10B03 Equine Articular Cartilage cDNA Library Equus 
(gb|CX593953.1|), blast E-value=0, identity=97.5% 
               

               
               720-999, CT020017A20D12 Equine Articular Cartilage cDNA Library Equus 
(gb|CX597223.1|), blast E-value=0, identity=97.5% 
               

               
               720-998, GL-Cf-3563 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN746771.1|), blast E-value=0, identity=97.85%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               720-999, DB339833 TESTI4 Homo sapiens cDNA clone TESTI4009017 3', mRNA 
(dbj|DB339833.1|), blast E-value=0, identity=95.71% 
               

               
               720-999, CH3#009_E07T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU747122.1|), blast E-value=0, identity=97.86% 
               

               
               720-999, ig27e09.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK824517.1|), 
blast E-value=0, identity=95.71% 
               

               
               720-999, CT020007A10B03 Equine Articular Cartilage cDNA Library Equus 
(gb|CX593953.1|), blast E-value=0, identity=97.5% 
               

               
               720-999, CT020017A20D12 Equine Articular Cartilage cDNA Library Equus 
(gb|CX597223.1|), blast E-value=0, identity=97.5% 
               

               
               720-998, GL-Cf-3563 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN746771.1|), blast E-value=0, identity=97.85%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of M29550, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of M29550, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-1068, gnl|bosTau2|chr28 (22658281-22657247)
               

               
               26-1068, gnl|Hg17|chr10 (74874598-74873564)
               

               
               26-1068, gnl|Mm7|chr14 (18165289-18164239)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1068, gnl|bosTau2|chr28 (22658281-22657247)
               

               
               26-1068, gnl|Hg17|chr10 (74874598-74873564)
               

               
               26-1068, gnl|Mm7|chr14 (18165289-18164239)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mga (0.32041)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	26-265, - strand, RNAz p=0.977531
	306-424, - strand, RNAz p=0.519518
	720-999, + strand, RNAz p=0.993598

	720-999, DB339833 TESTI4 Homo sapiens cDNA clone TESTI4009017 3', mRNA (dbj\|DB339833.1\|), blast E-value=0, identity=95.71%
	720-999, CH3#009_E07T3 Canine heart normalized cDNA Library in pBluescript (gb\|BU747122.1\|), blast E-value=0, identity=97.86%
	720-999, ig27e09.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CK824517.1\|), blast E-value=0, identity=95.71%
	720-999, CT020007A10B03 Equine Articular Cartilage cDNA Library Equus (gb\|CX593953.1\|), blast E-value=0, identity=97.5%
	720-999, CT020017A20D12 Equine Articular Cartilage cDNA Library Equus (gb\|CX597223.1\|), blast E-value=0, identity=97.5%
	720-998, GL-Cf-3563 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN746771.1\|), blast E-value=0, identity=97.85%

	26-1068, gnl\|bosTau2\|chr28 (22658281-22657247)
	26-1068, gnl\|Hg17\|chr10 (74874598-74873564)
	26-1068, gnl\|Mm7\|chr14 (18165289-18164239)

	mga (0.32041)
	pla (0.267344)
	ece (0.229305)
	mgm (0.180343)
	fhi (0.169578)
	liv (0.146284)
	ova (0.129132)
	ret (0.128733)