Ss1.1-Mixn-0003j03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCCCCGGGGGGAGCCCCAGGATGGACTCTACTGCATCCGGAACTCCTCCACCAAGTC AGGGAAGGTTCTGGTCGTGTGGGACGAAACCTCCAGCAAAGTGAGGAACTACCGCATCTT TGAGAAGGACTCGAAGTTCTACCTGGAGGGCGAGGTCCTGTTTGTGAGTGTGGGCAGCCT GGTGGAACACTACCACACCCACGTGCTGCCCGGCCACCAGAGCCTGCTGCTGCGCCACCC CTACGGCTACGCCAGGCCCAGGTGACACCGCCCCACCGGCTCCCGGCCACACAGGAGGAG ACTGGCTTGCACGGGAGGATGAGCAGGAGCCAGCATGGTGCTTTGGCGTGGGGTCTCCCC GACGGACACTGCAGGGAAACTGCCAGGCCGGGCTCCACCCAGCAGGCTGGGTCCCCGGGG CCAGGCCAGACCCTGGGCTCCAGAGAATTGAGTGGGGCTCTCTGATCTCACCCCGCCCAC CTTGCAGGAGCCCAGGAGCCCAGGACTGAGTCCAGCCAGGACGTCCCGGACAGGAATTCT GGCACAGCCACCCTGCACTGGGCTGGGAGCTGGGCAGGGCTGGGACATTTGGGGTGGGGA CAGGGGCTGGCCCCAGGTTCCCCCAGGAACGCTACAACGCAGGCTCCAGAGGGGCCCTTG CTGCACAATAAAGCACAGATGACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCCCCGGGGGGAGCCCCAGGATGGACTCTACTGCATCCGGAACTCCTCCACCAAGTC AGGGAAGGTTCTGGTCGTGTGGGACGAAACCTCCAGCAAAGTGAGGAACTACCGCATCTT TGAGAAGGACTCGAAGTTCTACCTGGAGGGCGAGGTCCTGTTTGTGAGTGTGGGCAGCCT GGTGGAACACTACCACACCCACGTGCTGCCCGGCCACCAGAGCCTGCTGCTGCGCCACCC CTACGGCTACGCCAGGCCCAGGTGACACCGCCCCACCGGCTCCCGGCCACACAGGAGGAG ACTGGCTTGCACGGGAGGATGAGCAGGAGCCAGCATGGTGCTTTGGCGTGGGGTCTCCCC GACGGACACTGCAGGGAAACTGCCAGGCCGGGCTCCACCCAGCAGGCTGGGTCCCCGGGG CCAGGCCAGACCCTGGGCTCCAGAGAATTGAGTGGGGCTCTCTGATCTCACCCCGCCCAC CTTGCAGGAGCCCAGGAGCCCAGGACTGAGTCCAGCCAGGACGTCCCGGACAGGAATTCT GGCACAGCCACCCTGCACTGGGCTGGGAGCTGGGCAGGGCTGGGACATTTGGGGTGGGGA CAGGGGCTGGCCCCAGGTTCCCCCAGGAACGCTACAACGCAGGCTCCAGAGGGGCCCTTG CTGCACAATAAAGCACAGATGACC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 423-528, - strand, RNAz p=0.947961 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 423-528, - strand, RNAz p=0.947961 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 453-613, - strand, RNAmicro p=0.999507 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 126-269, gnl|bosTau2|chr6 (65248029-65248172) | |
| 126-269, gnl|canFam2|chr3 (64275499-64275337) | |
| 126-269, gnl|danRer3|chr10 (1306236-1306056) | |
| 126-269, gnl|fr1|chrUn (265778273-265778156) | |
| 126-269, gnl|galGal2|chr4 (82664163-82663991) | |
| 126-269, gnl|hg17|chr4 (2872399-2872571) | |
| 126-269, gnl|Hg17|chr4 (2872428-2872571) | |
| 126-269, gnl|loxAfr1|scaffold_98455 (20-189) | |
| 126-269, gnl|mm7|chr5 (33624886-33625056) | |
| 126-269, gnl|Mm7|chr5 (33624913-33625056) | |
| 126-269, gnl|monDom2|scaffold_10 (41490211-41490056) | |
| 126-269, gnl|oryCun1|scaffold_181721 (9797-9646) | |
| 126-269, gnl|panTro1|chr3 (2921694-2921865) | |
| 126-269, gnl|rheMac2|chr1 (1130473-1130302) | |
| 126-269, gnl|rn3|chr14 (81822325-81822155) | |
| 126-269, gnl|xenTro1|scaffold_1065 (150452-150610) | |
| 423-684, gnl|bosTau2|chr6 (65248308-65248565) | |
| 423-684, gnl|canFam2|chr3 (64275277-64274314) | |
| 423-684, gnl|hg17|chr4 (2872630-2873814) | |
| 423-684, gnl|Hg17|chr4 (2872706-2873017) | |
| 423-684, gnl|loxAfr1|scaffold_98455 (222-1366) | |
| 423-684, gnl|mm7|chr5 (33625113-33626078) | |
| 423-684, gnl|Mm7|chr5 (33625211-33625481) | |
| 423-684, gnl|oryCun1|scaffold_181721 (9587-8640) | |
| 423-684, gnl|panTro1|chr3 (2921924-2923108) | |
| 423-684, gnl|rheMac2|chr1 (1130243-1129070) | |
| 423-684, gnl|rn3|chr14 (81822099-81821190) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-269, gnl|bosTau2|chr6 (65248029-65248172) | |
| 126-269, gnl|canFam2|chr3 (64275499-64275337) | |
| 126-269, gnl|danRer3|chr10 (1306236-1306056) | |
| 126-269, gnl|fr1|chrUn (265778273-265778156) | |
| 126-269, gnl|galGal2|chr4 (82664163-82663991) | |
| 126-269, gnl|hg17|chr4 (2872399-2872571) | |
| 126-269, gnl|Hg17|chr4 (2872428-2872571) | |
| 126-269, gnl|loxAfr1|scaffold_98455 (20-189) | |
| 126-269, gnl|mm7|chr5 (33624886-33625056) | |
| 126-269, gnl|Mm7|chr5 (33624913-33625056) | |
| 126-269, gnl|monDom2|scaffold_10 (41490211-41490056) | |
| 126-269, gnl|oryCun1|scaffold_181721 (9797-9646) | |
| 126-269, gnl|panTro1|chr3 (2921694-2921865) | |
| 126-269, gnl|rheMac2|chr1 (1130473-1130302) | |
| 126-269, gnl|rn3|chr14 (81822325-81822155) | |
| 126-269, gnl|xenTro1|scaffold_1065 (150452-150610) | |
| 423-684, gnl|bosTau2|chr6 (65248308-65248565) | |
| 423-684, gnl|canFam2|chr3 (64275277-64274314) | |
| 423-684, gnl|hg17|chr4 (2872630-2873814) | |
| 423-684, gnl|Hg17|chr4 (2872706-2873017) | |
| 423-684, gnl|loxAfr1|scaffold_98455 (222-1366) | |
| 423-684, gnl|mm7|chr5 (33625113-33626078) | |
| 423-684, gnl|Mm7|chr5 (33625211-33625481) | |
| 423-684, gnl|oryCun1|scaffold_181721 (9587-8640) | |
| 423-684, gnl|panTro1|chr3 (2921924-2923108) | |
| 423-684, gnl|rheMac2|chr1 (1130243-1129070) | |
| 423-684, gnl|rn3|chr14 (81822099-81821190) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| cag (0.151194) |