Ss1.1-Mixn-0003k10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCGGGGCTGCAGACCGAGTGGAGCGGCTGCCAACCGAGGACCAGGAGCGGCCGCGTCG CCATTTTGCGGCCCTAAGCGGCCGCGACCGAGTCATGGCTGAGACCTACGACTTCCTCTT CAAATTCCTGGTGATTGGCAGTGCGGGTACTGGCAAGCGGCCGCGACCGAGTCATGGCTG AGACCTACGACTTCCTCTTCAAATTCCTGGTGATTGGCAGTGCGGGTACTGGCAAGTCAT GTCTCCTTCATCAGTTCATTGAGAGAAGCTACAGATAGGACTCCAACCACACAATCGGCG TGGAGTTTGGATCTCGGGTGGTCAACGTGGGTGGGAAGACTGTGAAGCTACAGATTTGGG ACACAGCCGGCCAGGAGCGGTTTCGGTCGGTGACGCGGAGTTATTACCGAGGGGCGGCCG GAGCCCTGCTGGTGTACGACATCACCAGCCGGGAGACTTACAACTCGCTGGCTGCCTGGC TGACGGACGCCCGCACGCTGGCCAGTCCCAACATCGTGGTCATTCTCTGTGGCAACAAGA AGGACCTGGACCCGGAGCGAGAGGTCACGTTCCTAGAGGCCTCCCGCTTTGCCCAGGAGA ACGAGCTGATGTTCCTGGAAACTAGTGCTCTCACGGGTGAGAACGTGGAGGAGGCGTTCC TGAAGTGTGCCCGCACCATTCTGAACAAGATCGACTCAGGTGAGCTTGACCCCGAGCGGA TGGGCTCTGGCATCCAGTACGGTGACGCCTCCCTTCGCCAGCTGCGGCAGCCTCGGAGTG CCCAGGCTGTGGCCCCTCAGCCCTGTGGCTGCTGAGTCCTGTGGAGCCAGCTCACCTGTT CTCCAGGACCAGCGCTGTCCTTCCGGCTGGGGCCCAGACCAGGCCCTGGGAGGCCGAGCC CCTTACCTGCCCTGGCCCCGGAGAAGCTGCCCTGCCACCTGCCCCCTTCCCTGGCCTGGT GGGGCCTGGCTGAGGGGCAGGACTGAGCCACGAGGGGGAGGGGGAATCCATACCTGCTGC TGCTTCCTCTGTCTTGGCTGCCCCTGTCCCCCCAAACCACCCCTAACCATACTCGAAGCC TTCCCAAAGCCTGAGACCAGGGCCATTTGGCCTCAGCTTCCCTGGCCCTTGCCATTGCGA GTACGTGTTATTTATTACCTGGAGGCCTGTCCCGTCCCCACCCCCAACCCCCATAAAGCA TTGTTTACACCTGTAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCGGGGCTGCAGACCGAGTGGAGCGGCTGCCAACCGAGGACCAGGAGCGGCCGCGTCG CCATTTTGCGGCCCTAAGCGGCCGCGACCGAGTCATGGCTGAGACCTACGACTTCCTCTT CAAATTCCTGGTGATTGGCAGTGCGGGTACTGGCAAGCGGCCGCGACCGAGTCATGGCTG AGACCTACGACTTCCTCTTCAAATTCCTGGTGATTGGCAGTGCGGGTACTGGCAAGTCAT GTCTCCTTCATCAGTTCATTGAGAGAAGCTACAGATAGGACTCCAACCACACAATCGGCG TGGAGTTTGGATCTCGGGTGGTCAACGTGGGTGGGAAGACTGTGAAGCTACAGATTTGGG ACACAGCCGGCCAGGAGCGGTTTCGGTCGGTGACGCGGAGTTATTACCGAGGGGCGGCCG GAGCCCTGCTGGTGTACGACATCACCAGCCGGGAGACTTACAACTCGCTGGCTGCCTGGC TGACGGACGCCCGCACGCTGGCCAGTCCCAACATCGTGGTCATTCTCTGTGGCAACAAGA AGGACCTGGACCCGGAGCGAGAGGTCACGTTCCTAGAGGCCTCCCGCTTTGCCCAGGAGA ACGAGCTGATGTTCCTGGAAACTAGTGCTCTCACGGGTGAGAACGTGGAGGAGGCGTTCC TGAAGTGTGCCCGCACCATTCTGAACAAGATCGACTCAGGTGAGCTTGACCCCGAGCGGA TGGGCTCTGGCATCCAGTACGGTGACGCCTCCCTTCGCCAGCTGCGGCAGCCTCGGAGTG CCCAGGCTGTGGCCCCTCAGCCCTGTGGCTGCTGAGTCCTGTGGAGCCAGCTCACCTGTT CTCCAGGACCAGCGCTGTCCTTCCGGCTGGGGCCCAGACCAGGCCCTGGGAGGCCGAGCC CCTTACCTGCCCTGGCCCCGGAGAAGCTGCCCTGCCACCTGCCCCCTTCCCTGGCCTGGT GGGGCCTGGCTGAGGGGCAGGACTGAGCCACGAGGGGGAGGGGGAATCCATACCTGCTGC TGCTTCCTCTGTCTTGGCTGCCCCTGTCCCCCCAAACCACCCCTAACCATACTCGAAGCC TTCCCAAAGCCTGAGACCAGGGCCATTTGGCCTCAGCTTCCCTGGCCCTTGCCATTGCGA GTACGTGTTATTTATTACCTGGAGGCCTGTCCCGTCCCCACCCCCAACCCCCATAAAGCA TTGTTTACACCTGTAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 828-930, - strand, RNAz p=0.935256 | |
| 970-1063, + strand, RNAz p=0.833133 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 828-930, - strand, RNAz p=0.935256 | |
| 970-1063, + strand, RNAz p=0.833133 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr18 (45474454-45474563) | |
| 1-110, gnl|Hg17|chr19 (45976027-45976136) | |
| 1-110, gnl|Mm7|chr7 (24097695-24097586) | |
| 272-392, gnl|bosTau2|chr18 (45476132-45476252) | |
| 272-392, gnl|canFam2|chr1 (115918890-115918749) | |
| 272-392, gnl|danRer3|chrNA (74453744-74453604) | |
| 272-392, gnl|dasNov1|scaffold_177757 (2726-2585) | |
| 272-392, gnl|echTel1|scaffold_14258 (2122-2230) | |
| 272-392, gnl|fr1|chrUn (87223839-87223700) | |
| 272-392, gnl|hg17|chr19 (45978111-45978252) | |
| 272-392, gnl|Hg17|chr19 (45978131-45978251) | |
| 272-392, gnl|loxAfr1|scaffold_14476 (39158-39048) | |
| 272-392, gnl|mm7|chr7 (24094773-24094632) | |
| 272-392, gnl|Mm7|chr7 (24094751-24094631) | |
| 272-392, gnl|monDom2|scaffold_149 (389691-389826) | |
| 272-392, gnl|oryCun1|scaffold_107836 (4283-4420) | |
| 272-392, gnl|panTro1|chr20 (42969933-42970074) | |
| 272-392, gnl|rheMac2|chr19 (47147296-47147437) | |
| 272-392, gnl|rn3|chr1 (82329801-82329661) | |
| 272-392, gnl|tetNig1|chr16 (1509685-1509548) | |
| 272-392, gnl|xenTro1|scaffold_728 (562901-563036) | |
| 446-601, gnl|bosTau2|chr28 (597440-597285) | |
| 446-601, gnl|canFam2|chr1 (115917008-115916892) | |
| 446-601, gnl|danRer3|chrNA (74450446-74450330) | |
| 446-601, gnl|dasNov1|scaffold_8451 (3304-3395) | |
| 446-601, gnl|echTel1|scaffold_270116 (7039-6923) | |
| 446-601, gnl|fr1|chrUn (87223038-87222922) | |
| 446-601, gnl|Hg17|chr1 (225739961-225740116) | |
| 446-601, gnl|hg17|chr19 (45981662-45981778) | |
| 446-601, gnl|loxAfr1|scaffold_56129 (6998-6882) | |
| 446-601, gnl|mm7|chr7 (24093441-24093325) | |
| 446-601, gnl|Mm7|chr8 (122417371-122417526) | |
| 446-601, gnl|monDom2|scaffold_149 (390183-390299) | |
| 446-601, gnl|oryCun1|scaffold_174862 (40261-40145) | |
| 446-601, gnl|panTro1|chr20 (42973488-42973604) | |
| 446-601, gnl|rheMac2|chr19 (47150482-47150598) | |
| 446-601, gnl|rn3|chr1 (82326824-82326708) | |
| 446-601, gnl|tetNig1|chr16 (1509110-1508994) | |
| 446-601, gnl|xenTro1|scaffold_728 (569579-569695) | |
| 603-704, gnl|bosTau2|chr18 (45479408-45479509) | |
| 603-704, gnl|canFam2|chr1 (115915848-115915741) | |
| 603-704, gnl|danRer3|chrNA (74448157-74448050) | |
| 603-704, gnl|dasNov1|scaffold_3567 (104823-104929) | |
| 603-704, gnl|echTel1|scaffold_270116 (5652-5531) | |
| 603-704, gnl|fr1|chrUn (87222815-87222711) | |
| 603-704, gnl|hg17|chr19 (45984401-45984510) | |
| 603-704, gnl|Hg17|chr19 (45984409-45984510) | |
| 603-704, gnl|loxAfr1|scaffold_56129 (5545-5444) | |
| 603-704, gnl|mm7|chr7 (24091829-24091720) | |
| 603-704, gnl|Mm7|chr7 (24091819-24091718) | |
| 603-704, gnl|monDom2|scaffold_149 (391069-391176) | |
| 603-704, gnl|oryCun1|scaffold_191032 (70789-70889) | |
| 603-704, gnl|rheMac2|chr19 (47153843-47153952) | |
| 603-704, gnl|rn3|chr1 (82325205-82325096) | |
| 603-704, gnl|tetNig1|chr16 (1508880-1508779) | |
| 603-704, gnl|xenTro1|scaffold_728 (571113-571220) | |
| 828-1214, gnl|bosTau2|chr18 (45482629-45483032) | |
| 828-1214, gnl|canFam2|chr1 (115912256-115911886) | |
| 828-1214, gnl|dasNov1|scaffold_3567 (107941-108316) | |
| 828-1214, gnl|hg17|chr19 (45994313-45994684) | |
| 828-1214, gnl|Hg17|chr19 (45994312-45994753) | |
| 828-1214, gnl|mm7|chr7 (24087667-24087290) | |
| 828-1214, gnl|Mm7|chr7 (24087666-24087284) | |
| 828-1214, gnl|oryCun1|scaffold_191032 (71014-71404) | |
| 828-1214, gnl|panTro1|chr20 (42955811-42956191) | |
| 828-1214, gnl|rheMac2|chr19 (47163331-47163717) | |
| 828-1214, gnl|rn3|chr1 (82321421-82321038) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr18 (45474454-45474563) | |
| 1-110, gnl|Hg17|chr19 (45976027-45976136) | |
| 1-110, gnl|Mm7|chr7 (24097695-24097586) | |
| 272-392, gnl|bosTau2|chr18 (45476132-45476252) | |
| 272-392, gnl|canFam2|chr1 (115918890-115918749) | |
| 272-392, gnl|danRer3|chrNA (74453744-74453604) | |
| 272-392, gnl|dasNov1|scaffold_177757 (2726-2585) | |
| 272-392, gnl|echTel1|scaffold_14258 (2122-2230) | |
| 272-392, gnl|fr1|chrUn (87223839-87223700) | |
| 272-392, gnl|hg17|chr19 (45978111-45978252) | |
| 272-392, gnl|Hg17|chr19 (45978131-45978251) | |
| 272-392, gnl|loxAfr1|scaffold_14476 (39158-39048) | |
| 272-392, gnl|mm7|chr7 (24094773-24094632) | |
| 272-392, gnl|Mm7|chr7 (24094751-24094631) | |
| 272-392, gnl|monDom2|scaffold_149 (389691-389826) | |
| 272-392, gnl|oryCun1|scaffold_107836 (4283-4420) | |
| 272-392, gnl|panTro1|chr20 (42969933-42970074) | |
| 272-392, gnl|rheMac2|chr19 (47147296-47147437) | |
| 272-392, gnl|rn3|chr1 (82329801-82329661) | |
| 272-392, gnl|tetNig1|chr16 (1509685-1509548) | |
| 272-392, gnl|xenTro1|scaffold_728 (562901-563036) | |
| 446-601, gnl|bosTau2|chr28 (597440-597285) | |
| 446-601, gnl|canFam2|chr1 (115917008-115916892) | |
| 446-601, gnl|danRer3|chrNA (74450446-74450330) | |
| 446-601, gnl|dasNov1|scaffold_8451 (3304-3395) | |
| 446-601, gnl|echTel1|scaffold_270116 (7039-6923) | |
| 446-601, gnl|fr1|chrUn (87223038-87222922) | |
| 446-601, gnl|Hg17|chr1 (225739961-225740116) | |
| 446-601, gnl|hg17|chr19 (45981662-45981778) | |
| 446-601, gnl|loxAfr1|scaffold_56129 (6998-6882) | |
| 446-601, gnl|mm7|chr7 (24093441-24093325) | |
| 446-601, gnl|Mm7|chr8 (122417371-122417526) | |
| 446-601, gnl|monDom2|scaffold_149 (390183-390299) | |
| 446-601, gnl|oryCun1|scaffold_174862 (40261-40145) | |
| 446-601, gnl|panTro1|chr20 (42973488-42973604) | |
| 446-601, gnl|rheMac2|chr19 (47150482-47150598) | |
| 446-601, gnl|rn3|chr1 (82326824-82326708) | |
| 446-601, gnl|tetNig1|chr16 (1509110-1508994) | |
| 446-601, gnl|xenTro1|scaffold_728 (569579-569695) | |
| 603-704, gnl|bosTau2|chr18 (45479408-45479509) | |
| 603-704, gnl|canFam2|chr1 (115915848-115915741) | |
| 603-704, gnl|danRer3|chrNA (74448157-74448050) | |
| 603-704, gnl|dasNov1|scaffold_3567 (104823-104929) | |
| 603-704, gnl|echTel1|scaffold_270116 (5652-5531) | |
| 603-704, gnl|fr1|chrUn (87222815-87222711) | |
| 603-704, gnl|hg17|chr19 (45984401-45984510) | |
| 603-704, gnl|Hg17|chr19 (45984409-45984510) | |
| 603-704, gnl|loxAfr1|scaffold_56129 (5545-5444) | |
| 603-704, gnl|mm7|chr7 (24091829-24091720) | |
| 603-704, gnl|Mm7|chr7 (24091819-24091718) | |
| 603-704, gnl|monDom2|scaffold_149 (391069-391176) | |
| 603-704, gnl|oryCun1|scaffold_191032 (70789-70889) | |
| 603-704, gnl|rheMac2|chr19 (47153843-47153952) | |
| 603-704, gnl|rn3|chr1 (82325205-82325096) | |
| 603-704, gnl|tetNig1|chr16 (1508880-1508779) | |
| 603-704, gnl|xenTro1|scaffold_728 (571113-571220) | |
| 828-1214, gnl|bosTau2|chr18 (45482629-45483032) | |
| 828-1214, gnl|canFam2|chr1 (115912256-115911886) | |
| 828-1214, gnl|dasNov1|scaffold_3567 (107941-108316) | |
| 828-1214, gnl|hg17|chr19 (45994313-45994684) | |
| 828-1214, gnl|Hg17|chr19 (45994312-45994753) | |
| 828-1214, gnl|mm7|chr7 (24087667-24087290) | |
| 828-1214, gnl|Mm7|chr7 (24087666-24087284) | |
| 828-1214, gnl|oryCun1|scaffold_191032 (71014-71404) | |
| 828-1214, gnl|panTro1|chr20 (42955811-42956191) | |
| 828-1214, gnl|rheMac2|chr19 (47163331-47163717) | |
| 828-1214, gnl|rn3|chr1 (82321421-82321038) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| col (0.195008) | |
| eye (0.170503) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| col (0.195008) | |
| eye (0.170503) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |