Non-Coding RNA Search

Ss1.1-Mixn-0003l07.5

Sequence:


               
               GTCTTTCGCCAGCCTCTTCTCCGACTGACACCCCACCCCGAGAGCCCCCACTTCCCTGGG
CAGCCCCCGTCTGGGCCCTGAATCCATTTCTCACTTTTGGAGTCTCACCCCTTGAGAAGC
CCACTCCTGGATCGCCCAGACCCCTCTTCTCACTCCTCAGAAAGCCCGAGTCCCTGGGGA
AACCTCGCTCCTGGTCCTAAGTCCACTTCTCACGTTCGGAATGCCCATGTCCTTTCAAAA
GCCCCCTCCCGCTCACCCCAAGCCCTACTTCTCAGTTTGAGAACCTCAGCATTCCTGAAG
ACATCCACTCCCGGTCCCCCCCGAGTGCGTTTTCCTTCCTGGAAGCACCCAAACTCCAGG
CAACCCCTCCTGGAGCCCTGAAATTCCTGGAAAACCCCACTCCTGGTCACAGATGTCTCC
AGCACACCTTGTTCCCCATCAGAATTTCCCCAATCCTTAAAATCCTTAAGAAACCCCTCC
CTCTGAGACCCCCTCTGTGACCTCCCACTGCGGGAGATCCAGCTCTTCAAATGCCCCCCG
CCCAGCCCCACAAGGATTTCCCTTGGACACCAACCCCCAACCCCCGGCCACCCTACTCAA
CACACTGGGAGCTCCTCCCACTGCTAGGACCCCTCGGTGCCCCAGGGACCCTAGCCCCAC
TTTCCTGCCTCTGACAGCTGTCTTTAAATATGCAAATCCCACCCAACCTCCCAGAATCCT
TTGCACACAGCGGGCCAGTGGTCCCCCACTTGCCCACCTTTGCCGTGGTGTCTGTGTCTG
TGACTGACGTGGCCTCCTCTCGTGCCGTGCTTGGCATATGTGGTCCTCGTTCATCGTGCC
GCCTGTGGTGATGCGTGCAGTGGCGCTGTTTGTGTGGTCCGCACCTACCCCCAACCTCCA
CTCCTTGCCTGGACTCACCCTCACCCCTCAGCGGCTCTGAACCCCACGAGAAGAGTCGGG
AAACAAAATAAACAAGCAAAGGCCCAGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTCGCCAGCCTCTTCTCCGACTGACACCCCACCCCGAGAGCCCCCACTTCCCTGGG
CAGCCCCCGTCTGGGCCCTGAATCCATTTCTCACTTTTGGAGTCTCACCCCTTGAGAAGC
CCACTCCTGGATCGCCCAGACCCCTCTTCTCACTCCTCAGAAAGCCCGAGTCCCTGGGGA
AACCTCGCTCCTGGTCCTAAGTCCACTTCTCACGTTCGGAATGCCCATGTCCTTTCAAAA
GCCCCCTCCCGCTCACCCCAAGCCCTACTTCTCAGTTTGAGAACCTCAGCATTCCTGAAG
ACATCCACTCCCGGTCCCCCCCGAGTGCGTTTTCCTTCCTGGAAGCACCCAAACTCCAGG
CAACCCCTCCTGGAGCCCTGAAATTCCTGGAAAACCCCACTCCTGGTCACAGATGTCTCC
AGCACACCTTGTTCCCCATCAGAATTTCCCCAATCCTTAAAATCCTTAAGAAACCCCTCC
CTCTGAGACCCCCTCTGTGACCTCCCACTGCGGGAGATCCAGCTCTTCAAATGCCCCCCG
CCCAGCCCCACAAGGATTTCCCTTGGACACCAACCCCCAACCCCCGGCCACCCTACTCAA
CACACTGGGAGCTCCTCCCACTGCTAGGACCCCTCGGTGCCCCAGGGACCCTAGCCCCAC
TTTCCTGCCTCTGACAGCTGTCTTTAAATATGCAAATCCCACCCAACCTCCCAGAATCCT
TTGCACACAGCGGGCCAGTGGTCCCCCACTTGCCCACCTTTGCCGTGGTGTCTGTGTCTG
TGACTGACGTGGCCTCCTCTCGTGCCGTGCTTGGCATATGTGGTCCTCGTTCATCGTGCC
GCCTGTGGTGATGCGTGCAGTGGCGCTGTTTGTGTGGTCCGCACCTACCCCCAACCTCCA
CTCCTTGCCTGGACTCACCCTCACCCCTCAGCGGCTCTGAACCCCACGAGAAGAGTCGGG
AAACAAAATAAACAAGCAAAGGCCCAGCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-194, - strand, RNAz p=0.99616
               

               
               403-519, - strand, RNAz p=0.871217
               

               
               590-824, - strand, RNAz p=0.996771

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-194, - strand, RNAz p=0.99616
               

               
               403-519, - strand, RNAz p=0.871217
               

               
               590-824, - strand, RNAz p=0.996771

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-194, LB02720.CR_G12 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891474.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, LB02824.CR_F12 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912521.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, 000211BCEB003952HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY128069.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, 1529241 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY454858.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, LB02531.CR.1_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE339946.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, LB02551.CR_J03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE345568.1|), 
blast E-value=5.60519e-45, identity=87.69%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-194, LB02720.CR_G12 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891474.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, LB02824.CR_F12 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912521.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, 000211BCEB003952HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY128069.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, 1529241 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY454858.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, LB02531.CR.1_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE339946.1|), 
blast E-value=5.60519e-45, identity=87.69% 
               

               
               1-194, LB02551.CR_J03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE345568.1|), 
blast E-value=5.60519e-45, identity=87.69%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB208831, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB208831, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-992, gnl|bosTau2|chrX (25482928-25481961)
               

               
               1-992, gnl|Hg17|chrX (47188544-47187551)
               

               
               1-992, gnl|Mm7|chrX (19294651-19293661)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-992, gnl|bosTau2|chrX (25482928-25481961)
               

               
               1-992, gnl|Hg17|chrX (47188544-47187551)
               

               
               1-992, gnl|Mm7|chrX (19294651-19293661)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fcc (1.38449)
               

               
               cbr (0.639877)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               mas (0.210305)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.38449)
               

               
               cbr (0.639877)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               mas (0.210305)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nbm (0.0993246)

	1-194, - strand, RNAz p=0.99616
	403-519, - strand, RNAz p=0.871217
	590-824, - strand, RNAz p=0.996771

	1-194, LB02720.CR_G12 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV891474.1\|), blast E-value=5.60519e-45, identity=87.69%
	1-194, LB02824.CR_F12 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV912521.1\|), blast E-value=5.60519e-45, identity=87.69%
	1-194, 000211BCEB003952HT BCEB Bos taurus cDNA, mRNA sequence (gb\|DY128069.1\|), blast E-value=5.60519e-45, identity=87.69%
	1-194, 1529241 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY454858.1\|), blast E-value=5.60519e-45, identity=87.69%
	1-194, LB02531.CR.1_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE339946.1\|), blast E-value=5.60519e-45, identity=87.69%
	1-194, LB02551.CR_J03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE345568.1\|), blast E-value=5.60519e-45, identity=87.69%

	1-992, gnl\|bosTau2\|chrX (25482928-25481961)
	1-992, gnl\|Hg17\|chrX (47188544-47187551)
	1-992, gnl\|Mm7\|chrX (19294651-19293661)

	fcc (1.38449)
	cbr (0.639877)
	fbs (0.350693)
	hyp (0.285673)
	mas (0.210305)
	cag (0.151194)
	hlv (0.139256)
	nbm (0.0993246)