Ss1.1-Mixn-0003m10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGCTGAAAGCTGGTTATACAGACAAACAGAGGAGGGACTTCCTGAGTGAGGCCAGCAT CATGGGACAGTTCGACCACCCCAATATCATTCACTTGGAAGGCGTCGTCACCAAATGTAA ACCAGTAATGATCATAACAGAGTACATGGAGAACGGCTCCTTGGACGCATTCCTCAGGAA GAATGATGGCAGGTTTACGGTCATTCAGCTGGTGGGCATGCTTCGTGGCATTGGGTCCGG GATGAAGTATTTATCGGATATGAGCTACGTGCATCGAGACCTGGCTGCACGGAACATTCT AGTCAATAGCAACTTGGTCTGCAAAGTGTCTGATTTCGGCATGTCCCGGGTGCTGGAGGA TGATCCAGAAGCCGCTTATACTACCAGGGGTGGCAAGATTCCTATCCGGTGGACTGCGCC AGAAGCAATTGCCTATCGTAAATTCACATCAGCAAGTGATGTATGGAGCTACGGGATCGT TATGTGGGAAGTGATGTCGTATGGAGAGAGACCCTACTGGGACATGTCCAATCAAGATGT GATTAAAGCCATCGAGGAAGGCTATCGGCTGCCCCCTCCAATGGACTGCCCCATTGCACT CCACCAGCTGATGCTGGACTGCTGGCAGAAGGAGAGAAGCGACAGGCCGAAATTTGGGCA GATTGTCAACATGTTGGACAAACTCATCCGCAACCCCAACAGCTTGAAGAGGACGGGGAC CGAGAGCTCCAGACCTAACACTGCCTTGTTGGATCCAAGCTCCCCTGAGTTCTCTGCCGT GGTATCGGTGGGTGATTGGCTCCAGGCCATTAAAATGGACCGATATAAGGATAACTTCAC TGCTGCTGGTTATACCACACTAGAGGCTGTAGTGCACATGAACCAGGAGTAAGTACTCAG CGATGTAACACGAAAGGTGACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGCTGAAAGCTGGTTATACAGACAAACAGAGGAGGGACTTCCTGAGTGAGGCCAGCAT CATGGGACAGTTCGACCACCCCAATATCATTCACTTGGAAGGCGTCGTCACCAAATGTAA ACCAGTAATGATCATAACAGAGTACATGGAGAACGGCTCCTTGGACGCATTCCTCAGGAA GAATGATGGCAGGTTTACGGTCATTCAGCTGGTGGGCATGCTTCGTGGCATTGGGTCCGG GATGAAGTATTTATCGGATATGAGCTACGTGCATCGAGACCTGGCTGCACGGAACATTCT AGTCAATAGCAACTTGGTCTGCAAAGTGTCTGATTTCGGCATGTCCCGGGTGCTGGAGGA TGATCCAGAAGCCGCTTATACTACCAGGGGTGGCAAGATTCCTATCCGGTGGACTGCGCC AGAAGCAATTGCCTATCGTAAATTCACATCAGCAAGTGATGTATGGAGCTACGGGATCGT TATGTGGGAAGTGATGTCGTATGGAGAGAGACCCTACTGGGACATGTCCAATCAAGATGT GATTAAAGCCATCGAGGAAGGCTATCGGCTGCCCCCTCCAATGGACTGCCCCATTGCACT CCACCAGCTGATGCTGGACTGCTGGCAGAAGGAGAGAAGCGACAGGCCGAAATTTGGGCA GATTGTCAACATGTTGGACAAACTCATCCGCAACCCCAACAGCTTGAAGAGGACGGGGAC CGAGAGCTCCAGACCTAACACTGCCTTGTTGGATCCAAGCTCCCCTGAGTTCTCTGCCGT GGTATCGGTGGGTGATTGGCTCCAGGCCATTAAAATGGACCGATATAAGGATAACTTCAC TGCTGCTGGTTATACCACACTAGAGGCTGTAGTGCACATGAACCAGGAGTAAGTACTCAG CGATGTAACACGAAAGGTGACCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-174, gnl|bosTau2|chr25 (32230248-32230421) | |
| 1-174, gnl|Hg17|chr7 (100055197-100055024) | |
| 1-174, gnl|Mm7|chr5 (136284879-136285052) | |
| 175-387, gnl|bosTau2|chr2 (83718718-83718929) | |
| 175-387, gnl|canFam2|chr2 (84450749-84450526) | |
| 175-387, gnl|danRer3|chr23 (42631913-42632141) | |
| 175-387, gnl|dasNov1|scaffold_115465 (2137-2363) | |
| 175-387, gnl|echTel1|scaffold_306801 (135752-135526) | |
| 175-387, gnl|fr1|chrUn (104982924-104982693) | |
| 175-387, gnl|galGal2|chr9 (15252480-15252702) | |
| 175-387, gnl|hg17|chr1 (16203857-16204083) | |
| 175-387, gnl|Hg17|chr1 (16204077-16203866) | |
| 175-387, gnl|loxAfr1|scaffold_36234 (34873-35099) | |
| 175-387, gnl|mm7|chr4 (140700863-140700638) | |
| 175-387, gnl|Mm7|chr4 (140700641-140700852) | |
| 175-387, gnl|monDom2|scaffold_109 (2944281-2944052) | |
| 175-387, gnl|oryCun1|scaffold_184704 (2283-2509) | |
| 175-387, gnl|panTro1|chr1 (16363483-16363709) | |
| 175-387, gnl|rheMac2|chr1 (18937401-18937627) | |
| 175-387, gnl|rn3|chr5 (160216749-160216524) | |
| 175-387, gnl|tetNig1|chrUn_random (28410308-28410528) | |
| 175-387, gnl|xenTro1|scaffold_209 (654737-654954) | |
| 181-360, gnl|bosTau2|chr25 (32233431-32233610) | |
| 181-360, gnl|canFam2|chr6 (11944077-11943827) | |
| 181-360, gnl|danRer3|chr23 (20850527-20850291) | |
| 181-360, gnl|dasNov1|scaffold_99587 (6716-6950) | |
| 181-360, gnl|echTel1|scaffold_309923 (3008-2756) | |
| 181-360, gnl|fr1|chrUn (4613308-4613538) | |
| 181-360, gnl|galGal2|chr9 (15252472-15252716) | |
| 181-360, gnl|hg17|chr7 (100049627-100049877) | |
| 181-360, gnl|Hg17|chr7 (100049851-100049672) | |
| 181-360, gnl|loxAfr1|scaffold_7748 (21812-21602) | |
| 181-360, gnl|mm7|chr5 (136288208-136287955) | |
| 181-360, gnl|Mm7|chr5 (136287983-136288162) | |
| 181-360, gnl|monDom2|scaffold_66 (2689239-2689472) | |
| 181-360, gnl|oryCun1|scaffold_208130 (2608-2859) | |
| 181-360, gnl|panTro1|chr6 (101823393-101823643) | |
| 181-360, gnl|rheMac2|chr3 (48101969-48102219) | |
| 181-360, gnl|rn3|chr11 (82087012-82087267) | |
| 181-360, gnl|tetNig1|chr7 (4449162-4448925) | |
| 181-360, gnl|xenTro1|scaffold_244 (783433-783676) | |
| 388-545, gnl|bosTau2|chr25 (32233940-32234097) | |
| 388-545, gnl|canFam2|chr6 (11944530-11944411) | |
| 388-545, gnl|danRer3|chr23 (20850762-20850643) | |
| 388-545, gnl|dasNov1|scaffold_41279 (11270-11159) | |
| 388-545, gnl|echTel1|scaffold_313256 (39414-39295) | |
| 388-545, gnl|fr1|chrUn (4613018-4613135) | |
| 388-545, gnl|galGal2|chr9 (15252231-15252350) | |
| 388-545, gnl|hg17|chr7 (100048684-100048803) | |
| 388-545, gnl|Hg17|chr7 (100048843-100048686) | |
| 388-545, gnl|loxAfr1|scaffold_145229 (237-118) | |
| 388-545, gnl|mm7|chr5 (136289139-136289020) | |
| 388-545, gnl|Mm7|chr5 (136288978-136289135) | |
| 388-545, gnl|monDom2|scaffold_66 (2688427-2688542) | |
| 388-545, gnl|oryCun1|scaffold_208130 (2328-2448) | |
| 388-545, gnl|panTro1|chr6 (101822450-101822569) | |
| 388-545, gnl|rheMac2|chr3 (48101018-48101137) | |
| 388-545, gnl|rn3|chr11 (82086750-82086866) | |
| 388-545, gnl|tetNig1|chr7 (4449451-4449337) | |
| 388-545, gnl|xenTro1|scaffold_244 (783107-783222) | |
| 728-918, gnl|bosTau2|chr2 (66559848-66560038) | |
| 728-918, gnl|Hg17|chr2 (222116849-222116658) | |
| 728-918, gnl|Mm7|chr1 (77600509-77600318) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-174, gnl|bosTau2|chr25 (32230248-32230421) | |
| 1-174, gnl|Hg17|chr7 (100055197-100055024) | |
| 1-174, gnl|Mm7|chr5 (136284879-136285052) | |
| 175-387, gnl|bosTau2|chr2 (83718718-83718929) | |
| 175-387, gnl|canFam2|chr2 (84450749-84450526) | |
| 175-387, gnl|danRer3|chr23 (42631913-42632141) | |
| 175-387, gnl|dasNov1|scaffold_115465 (2137-2363) | |
| 175-387, gnl|echTel1|scaffold_306801 (135752-135526) | |
| 175-387, gnl|fr1|chrUn (104982924-104982693) | |
| 175-387, gnl|galGal2|chr9 (15252480-15252702) | |
| 175-387, gnl|hg17|chr1 (16203857-16204083) | |
| 175-387, gnl|Hg17|chr1 (16204077-16203866) | |
| 175-387, gnl|loxAfr1|scaffold_36234 (34873-35099) | |
| 175-387, gnl|mm7|chr4 (140700863-140700638) | |
| 175-387, gnl|Mm7|chr4 (140700641-140700852) | |
| 175-387, gnl|monDom2|scaffold_109 (2944281-2944052) | |
| 175-387, gnl|oryCun1|scaffold_184704 (2283-2509) | |
| 175-387, gnl|panTro1|chr1 (16363483-16363709) | |
| 175-387, gnl|rheMac2|chr1 (18937401-18937627) | |
| 175-387, gnl|rn3|chr5 (160216749-160216524) | |
| 175-387, gnl|tetNig1|chrUn_random (28410308-28410528) | |
| 175-387, gnl|xenTro1|scaffold_209 (654737-654954) | |
| 181-360, gnl|bosTau2|chr25 (32233431-32233610) | |
| 181-360, gnl|canFam2|chr6 (11944077-11943827) | |
| 181-360, gnl|danRer3|chr23 (20850527-20850291) | |
| 181-360, gnl|dasNov1|scaffold_99587 (6716-6950) | |
| 181-360, gnl|echTel1|scaffold_309923 (3008-2756) | |
| 181-360, gnl|fr1|chrUn (4613308-4613538) | |
| 181-360, gnl|galGal2|chr9 (15252472-15252716) | |
| 181-360, gnl|hg17|chr7 (100049627-100049877) | |
| 181-360, gnl|Hg17|chr7 (100049851-100049672) | |
| 181-360, gnl|loxAfr1|scaffold_7748 (21812-21602) | |
| 181-360, gnl|mm7|chr5 (136288208-136287955) | |
| 181-360, gnl|Mm7|chr5 (136287983-136288162) | |
| 181-360, gnl|monDom2|scaffold_66 (2689239-2689472) | |
| 181-360, gnl|oryCun1|scaffold_208130 (2608-2859) | |
| 181-360, gnl|panTro1|chr6 (101823393-101823643) | |
| 181-360, gnl|rheMac2|chr3 (48101969-48102219) | |
| 181-360, gnl|rn3|chr11 (82087012-82087267) | |
| 181-360, gnl|tetNig1|chr7 (4449162-4448925) | |
| 181-360, gnl|xenTro1|scaffold_244 (783433-783676) | |
| 388-545, gnl|bosTau2|chr25 (32233940-32234097) | |
| 388-545, gnl|canFam2|chr6 (11944530-11944411) | |
| 388-545, gnl|danRer3|chr23 (20850762-20850643) | |
| 388-545, gnl|dasNov1|scaffold_41279 (11270-11159) | |
| 388-545, gnl|echTel1|scaffold_313256 (39414-39295) | |
| 388-545, gnl|fr1|chrUn (4613018-4613135) | |
| 388-545, gnl|galGal2|chr9 (15252231-15252350) | |
| 388-545, gnl|hg17|chr7 (100048684-100048803) | |
| 388-545, gnl|Hg17|chr7 (100048843-100048686) | |
| 388-545, gnl|loxAfr1|scaffold_145229 (237-118) | |
| 388-545, gnl|mm7|chr5 (136289139-136289020) | |
| 388-545, gnl|Mm7|chr5 (136288978-136289135) | |
| 388-545, gnl|monDom2|scaffold_66 (2688427-2688542) | |
| 388-545, gnl|oryCun1|scaffold_208130 (2328-2448) | |
| 388-545, gnl|panTro1|chr6 (101822450-101822569) | |
| 388-545, gnl|rheMac2|chr3 (48101018-48101137) | |
| 388-545, gnl|rn3|chr11 (82086750-82086866) | |
| 388-545, gnl|tetNig1|chr7 (4449451-4449337) | |
| 388-545, gnl|xenTro1|scaffold_244 (783107-783222) | |
| 728-918, gnl|bosTau2|chr2 (66559848-66560038) | |
| 728-918, gnl|Hg17|chr2 (222116849-222116658) | |
| 728-918, gnl|Mm7|chr1 (77600509-77600318) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| ese (0.126502) |