Ss1.1-Mixn-0003m24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGGCGCGGTGGGATCGAAATGGCGACCGAGGGGGATGTGGAGCTAGAATTGGAGACT GAGACCAGTGGCCCGGAGCGACCTCCCGAGAAGCCACGGAAGCACGACAGCGGTGCGGCG GACTTGGAGCGAGTCACCGATTATGCGGAGGAGAAGGAGATCCAGAGTTCCAATCTGGAG ACGGCCATGTCCGTAATCGGAGATAGACGGTCCCGGGAGCAGAAAGCAAAGCAGGAGCGG GAGAAGGAACTGGCAAAAGTCACCATCAAGAAGGAAGATCTGGAGCTGATAATGACAGAG ATGGAGATCTCTCGAGCAGCAGCAGAACGGAGTTTGAGAGAACACATGGGCAACGTGGTA GAGGCTCTTATTGCCCTGACCAACTGATTTGTGCTTTCTCAGACATACCCACTGGATTAA CTTATTTCAATAAAGATGCCTTCTTTTTCTTGCAGTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGGCGCGGTGGGATCGAAATGGCGACCGAGGGGGATGTGGAGCTAGAATTGGAGACT GAGACCAGTGGCCCGGAGCGACCTCCCGAGAAGCCACGGAAGCACGACAGCGGTGCGGCG GACTTGGAGCGAGTCACCGATTATGCGGAGGAGAAGGAGATCCAGAGTTCCAATCTGGAG ACGGCCATGTCCGTAATCGGAGATAGACGGTCCCGGGAGCAGAAAGCAAAGCAGGAGCGG GAGAAGGAACTGGCAAAAGTCACCATCAAGAAGGAAGATCTGGAGCTGATAATGACAGAG ATGGAGATCTCTCGAGCAGCAGCAGAACGGAGTTTGAGAGAACACATGGGCAACGTGGTA GAGGCTCTTATTGCCCTGACCAACTGATTTGTGCTTTCTCAGACATACCCACTGGATTAA CTTATTTCAATAAAGATGCCTTCTTTTTCTTGCAGTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-184, gnl|bosTau2|chr21 (34527914-34528097) | |
| 1-184, gnl|Hg17|chr15 (41880092-41880275) | |
| 1-184, gnl|Mm7|chr2 (121197958-121198141) | |
| 292-456, gnl|bosTau2|chr21 (34529007-34529167) | |
| 292-456, gnl|canFam2|chr30 (13536796-13536912) | |
| 292-456, gnl|danRer3|chr11 (29483183-29483287) | |
| 292-456, gnl|dasNov1|scaffold_16689 (11061-11177) | |
| 292-456, gnl|echTel1|scaffold_282561 (77898-77786) | |
| 292-456, gnl|fr1|chrUn (232749154-232749044) | |
| 292-456, gnl|galGal2|chrUn (141992586-141992693) | |
| 292-456, gnl|hg17|chr15 (41881190-41881301) | |
| 292-456, gnl|Hg17|chr15 (41881201-41881365) | |
| 292-456, gnl|loxAfr1|scaffold_39287 (25704-25589) | |
| 292-456, gnl|mm7|chr2 (121198985-121199099) | |
| 292-456, gnl|Mm7|chr2 (121198998-121199176) | |
| 292-456, gnl|monDom2|scaffold_53 (10273021-10272910) | |
| 292-456, gnl|oryCun1|scaffold_206587 (69085-69184) | |
| 292-456, gnl|panTro1|chr16 (41791494-41791605) | |
| 292-456, gnl|rheMac2|chr7 (22194794-22194905) | |
| 292-456, gnl|rn3|chr3 (108164959-108165073) | |
| 292-456, gnl|tetNig1|chrUn_random (6840177-6840284) | |
| 292-456, gnl|xenTro1|scaffold_358 (501900-501792) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-184, gnl|bosTau2|chr21 (34527914-34528097) | |
| 1-184, gnl|Hg17|chr15 (41880092-41880275) | |
| 1-184, gnl|Mm7|chr2 (121197958-121198141) | |
| 292-456, gnl|bosTau2|chr21 (34529007-34529167) | |
| 292-456, gnl|canFam2|chr30 (13536796-13536912) | |
| 292-456, gnl|danRer3|chr11 (29483183-29483287) | |
| 292-456, gnl|dasNov1|scaffold_16689 (11061-11177) | |
| 292-456, gnl|echTel1|scaffold_282561 (77898-77786) | |
| 292-456, gnl|fr1|chrUn (232749154-232749044) | |
| 292-456, gnl|galGal2|chrUn (141992586-141992693) | |
| 292-456, gnl|hg17|chr15 (41881190-41881301) | |
| 292-456, gnl|Hg17|chr15 (41881201-41881365) | |
| 292-456, gnl|loxAfr1|scaffold_39287 (25704-25589) | |
| 292-456, gnl|mm7|chr2 (121198985-121199099) | |
| 292-456, gnl|Mm7|chr2 (121198998-121199176) | |
| 292-456, gnl|monDom2|scaffold_53 (10273021-10272910) | |
| 292-456, gnl|oryCun1|scaffold_206587 (69085-69184) | |
| 292-456, gnl|panTro1|chr16 (41791494-41791605) | |
| 292-456, gnl|rheMac2|chr7 (22194794-22194905) | |
| 292-456, gnl|rn3|chr3 (108164959-108165073) | |
| 292-456, gnl|tetNig1|chrUn_random (6840177-6840284) | |
| 292-456, gnl|xenTro1|scaffold_358 (501900-501792) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| cte (0.87822) | |
| che (0.68157) | |
| cje (0.660939) | |
| sme (0.610874) | |
| fce (0.543183) | |
| sto (0.539471) | |
| hlv (0.417769) | |
| fcc (0.39557) | |
| col (0.390016) | |
| cmu (0.372787) | |
| cki (0.330469) | |
| csk (0.281492) | |
| cst (0.280073) | |
| nmm (0.265604) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nms (0.213858) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| che (0.68157) | |
| cje (0.660939) | |
| sme (0.610874) | |
| fce (0.543183) | |
| sto (0.539471) | |
| hlv (0.417769) | |
| fcc (0.39557) | |
| col (0.390016) | |
| cmu (0.372787) | |
| cki (0.330469) | |
| csk (0.281492) | |
| cst (0.280073) | |
| nmm (0.265604) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nms (0.213858) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| spc (0.113366) |